Evidence map›Paper›PMID 27456706›Full record

ArticleThe Journal of infectious diseases2016

Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand.

Sarah Auburn, David Serre, Richard D Pearson, Roberto Amato, Kanlaya Sriprawat, Sheren To, Irene Handayuni, Rossarin Suwanarusk, Bruce Russell, Eleanor Drury and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  9. Review
  10. Novel highly-multiplexed AmpliSeq targeted assay forFrontiers in cellular and infection microbiology · 2022
    Article
  11. Monitoring Plasmodium vivax resistance to antimalarials: Persisting challenges and future directions.International journal for parasitology. Drugs and drug resistance · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The genomic architecture of antimalarial drug resistance.Briefings in functional genomics · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 7 countries.

Sarah AuburnGlobal and Tropical Health Division, Menzies School of Health Research, Charles Darwin University, Australia.
David SerreGenomic Medicine Institute, Cleveland Clinic Lerner Research institute, Ohio.
Richard D PearsonWellcome Trust Sanger Institute, Hinxton Wellcome Trust Centre for Human Genetics.
Roberto AmatoWellcome Trust Sanger Institute, Hinxton Wellcome Trust Centre for Human Genetics.
Kanlaya SriprawatShoklo Malaria Research Unit, Faculty of Tropical Medicine, Mahidol University, Tak.
Sheren ToGlobal and Tropical Health Division, Menzies School of Health Research, Charles Darwin University, Australia.
Irene HandayuniGlobal and Tropical Health Division, Menzies School of Health Research, Charles Darwin University, Australia.
Rossarin SuwanaruskDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand Singapore Immunology Network, Agency for Science, Technology and Research, Singapore.
Bruce RussellDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Eleanor DruryWellcome Trust Sanger Institute, Hinxton.
Jim StalkerWellcome Trust Sanger Institute, Hinxton.
Olivo MiottoWellcome Trust Sanger Institute, Hinxton Medical Research Council Centre for Genomics and Global Health Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Dominic P KwiatkowskiWellcome Trust Sanger Institute, Hinxton Wellcome Trust Centre for Human Genetics Medical Research Council Centre for Genomics and Global Health.
Francois NostenCentre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford University, United Kingdom Shoklo Malaria Research Unit, Faculty of Tropical Medicine, Mahidol University, Tak.
Ric N PriceGlobal and Tropical Health Division, Menzies School of Health Research, Charles Darwin University, Australia Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford University, United Kingdom.
Menzies School of Health Research · AUWellcome Sanger Institute · GBCentre for Global Health Research · CACentre for Human Genetics · GBCleveland Clinic Lerner College of Medicine · USShoklo Malaria Research Unit · THSingapore Immunology Network · SGUniversity of Otago · NZUniversity of Oxford · GB

Funding

Genomic Analyses of Plasmodium vivax Responses to Antimalarial Drugs in CambodiaR01AI103228 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SERRE, DAVID · 2013 to 2017
$1.8M
Medical Research Council G0600718Medical Research Council MR/M006212/1NIAID NIH HHS R01 AI103228Wellcome Trust 090770/Z/09/ZWellcome Trust 091625Wellcome Trust 098051Wellcome Trust 200909/Z/16/Z
6 · The paper itself

Abstract

In regions of coendemicity for Plasmodium falciparum and Plasmodium vivax where mefloquine is used to treat P. falciparum infection, drug pressure mediated by increased copy numbers of the multidrug resistance 1 gene (pvmdr1) may select for mefloquine-resistant P. vivax Surveillance is not undertaken routinely owing in part to methodological challenges in detection of gene amplification. Using genomic data on 88 P. vivax samples from western Thailand, we identified pvmdr1 amplification in 17 isolates, all exhibiting tandem copies of a 37.6-kilobase pair region with identical breakpoints. A novel breakpoint-specific polymerase chain reaction assay was designed to detect the amplification. The assay demonstrated high sensitivity, identifying amplifications in 13 additional, polyclonal infections. Application to 132 further samples identified the common breakpoint in all years tested (2003-2015), with a decline in prevalence after 2012 corresponding to local discontinuation of mefloquine regimens. Assessment of the structure of pvmdr1 amplification in other geographic regions will yield information about the population-specificity of the breakpoints and underlying amplification mechanisms.

Indexed as

AntimalarialsATP-Binding Cassette, Sub-Family C ProteinsDNA, ProtozoanDrug Resistance, MultipleGene DosageGenomicsGenotypeHumansMalaria, FalciparumMalaria, VivaxMefloquineMembrane Transport ProteinsPlasmodium falciparumPlasmodium vivaxProtozoan ProteinsThailandAntimalarialsATP-Binding Cassette, Sub-Family C ProteinsDNA, ProtozoanMdr1 protein, Plasmodium vivaxMefloquineMembrane Transport ProteinsProtozoan Proteinscopy numbermalariamdr1mefloquinemultidrug resistancePlasmodium vivaxThailand

Identifiers

PMID27456706
PMCPMC5034950
OpenAlexW2491554320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.