ArticleScientific reports2016
Full transcription of the chloroplast genome in photosynthetic eukaryotes.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed, 80 citations in OpenAlex.
- Landscape of plastid DNA breaks in Arabidopsis during development and environmental stimulus.The Plant cell · 2026Article
- Integrated analysis of organelle RNA editing and DYW- type PPR genes identifies a candidate regulator of plastidFrontiers in plant science · 2026Article
- Chloroplast Genome Diversity and Marker Potentials of DiverseInternational journal of molecular sciences · 2025Article
- Incomplete lineage sorting and introgression among genera and species of Liliaceae tribe Tulipeae: insights from phylogenomics.BMC biology · 2025Article
- An improved nuclei isolation protocol from leaf tissue for single-cell transcriptomics.PloS one · 2025Article
- Article
- Characterization of the DNA accessibility of chloroplast genomes in grasses.Communications biology · 2024Article
- The Chloroplast Genome of Endive (Genes · 2023Article
- PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes.RNA biology · 2023Article
- High-resolution map of plastid-encoded RNA polymerase binding patterns demonstrates a major role of transcription in chloroplast gene expression.The Plant journal : for cell and molecular biology · 2022Article
- Cell adaptation of the extremophilic red microalgaFrontiers in plant science · 2022Article
- Comparative Transcriptome Profiling ofPlants (Basel, Switzerland) · 2021Article
- Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l.Systematic biology · 2021Article
- Noncoding RNA: An Insight into Chloroplast and Mitochondrial Gene Expressions.Life (Basel, Switzerland) · 2021Review
- Environmental RNAi pathways in the two-spotted spider mite.BMC genomics · 2021Article
- Tight association of genome rearrangements with gene expression in conifer plastomes.BMC plant biology · 2021Article
- Gene Loss, Pseudogenization in Plastomes of GenusFrontiers in genetics · 2021Article
- Screening and verification of extranuclear genetic markers in green tide algae from the Yellow Sea.PloS one · 2021Article
- The Genome and Transcriptome Analysis of thePlants (Basel, Switzerland) · 2020Article
- The Complete Chloroplast Genome Sequencing and Comparative Analysis of Reed Canary Grass (Plants (Basel, Switzerland) · 2020Article
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Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Prokaryotes possess a simple genome transcription system that is different from that of eukaryotes. In chloroplasts (plastids), it is believed that the prokaryotic gene transcription features govern genome transcription. However, the polycistronic operon transcription model cannot account for all the chloroplast genome (plastome) transcription products at whole-genome level, especially regarding various RNA isoforms. By systematically analyzing transcriptomes of plastids of algae and higher plants, and cyanobacteria, we find that the entire plastome is transcribed in photosynthetic green plants, and that this pattern originated from prokaryotic cyanobacteria - ancestor of the chloroplast genomes that diverged about 1 billion years ago. We propose a multiple arrangement transcription model that multiple transcription initiations and terminations combine haphazardly to accomplish the genome transcription followed by subsequent RNA processing events, which explains the full chloroplast genome transcription phenomenon and numerous functional and/or aberrant pre-RNAs. Our findings indicate a complex prokaryotic genome regulation when processing primary transcripts.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.