Evidence map›Paper›PMID 27455421›Full record

ArticleNature immunology2016

Open conformers of HLA-F are high-affinity ligands of the activating NK-cell receptor KIR3DS1.

Wilfredo F Garcia-Beltran, Angelique Hölzemer, Gloria Martrus, Amy W Chung, Yovana Pacheco, Camille R Simoneau, Marijana Rucevic, Pedro A Lamothe-Molina, Thomas Pertel, Tae-Eun Kim and 6 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed, 1 pooled it
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 1 synthesis or guideline pooled it, 229 citations in OpenAlex.

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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 4 countries.

Wilfredo F Garcia-BeltranRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Angelique HölzemerRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Gloria MartrusHeinrich-Pette Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany.
Amy W ChungRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Yovana PachecoRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Camille R SimoneauRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Marijana RucevicRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Pedro A Lamothe-MolinaRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Thomas PertelCenter for Neurologic Diseases, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Tae-Eun KimRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Haley DuganRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Galit AlterRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Julie Dechanet-MervilleCNRS, UMR 5164, Université de Bordeaux, Bordeaux, France.
Stephanie JostRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Mary CarringtonRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Marcus AltfeldRagon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.
Ragon Institute of MGH, MIT and Harvard · USBrigham and Women's Hospital · USImmunology from Concept and Experiments to Translation · FRLeibniz Institute of Virology (LIV) · DEUniversidad del Rosario · COUniversity Medical Center Hamburg-Eppendorf · DE

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Effects of genetic polymorphism in MHC, KIR, and related loci on human diseaseZIABC010791 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$18.2M
Vaccine Adjuvant/ Delivery Systems CoreP01AI104715 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI SCHIEF, WILLIAM · 2013 to 2017
$12.3M
NK cell mediated immune pressure in HIV-1 infectionR01AI067031 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI ALTFELD, MARCUS · 2006 to 2015
$4.4M
Identifying the ligand for the activating NK cell receptor KIR3DS1 and its protective role in HIV-1 disease progressionF31AI116366 · NIAID · HARVARD MEDICAL SCHOOL · PI GARCIA-BELTRAN, WILFREDO F · 2015 to 2018
$157k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIAID NIH HHS F31 AI116366NIAID NIH HHS P01 AI104715NIAID NIH HHS R01 AI067031NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

The activating natural killer (NK)-cell receptor KIR3DS1 has been linked to the outcome of various human diseases, including delayed progression of disease caused by human immunodeficiency virus type 1 (HIV-1), yet a ligand that would account for its biological effects has remained unknown. We screened 100 HLA class I proteins and found that KIR3DS1 bound to HLA-F, a result we confirmed biochemically and functionally. Primary human KIR3DS1(+) NK cells degranulated and produced antiviral cytokines after encountering HLA-F and inhibited HIV-1 replication in vitro. Activation of CD4(+) T cells triggered the transcription and surface expression of HLA-F mRNA and HLA-F protein, respectively, and induced binding of KIR3DS1. HIV-1 infection further increased the transcription of HLA-F mRNA but decreased the binding of KIR3DS1, indicative of a mechanism for evading recognition by KIR3DS1(+) NK cells. Thus, we have established HLA-F as a ligand of KIR3DS1 and have demonstrated cell-context-dependent expression of HLA-F that might explain the widespread influence of KIR3DS1 in human disease.

Indexed as

CD4-Positive T-LymphocytesCytokinesCytotoxicity, ImmunologicDisease ProgressionHistocompatibility Antigens Class IHIV-1HIV InfectionsHumansImmune EvasionJurkat CellsKiller Cells, NaturalLigandsLymphocyte ActivationPrimary Cell CultureReceptors, KIR3DS1Virus LatencyCytokinesHistocompatibility Antigens Class IHLA-F antigensLigandsReceptors, KIR3DS1

Identifiers

PMID27455421
PMCPMC4992421
OpenAlexW2490657737

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.