Evidence map›Paper›PMID 27455323›Full record

ArticleToxins2016

Type II Toxin-Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803.

Stefan Kopfmann, Stefanie K Roesch, Wolfgang R Hess

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Towards Exploring Toxin-Antitoxin Systems inInternational journal of molecular sciences · 2019
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Interactions of Freshwater Cyanobacteria with Bacterial Antagonists.Applied and environmental microbiology · 2017
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Stefan KopfmannFaculty of Biology, Institute of Biology 3, Genetics and Experimental Bioinformatics, University of Freiburg, Schänzlestr. 1, D-79104 Freiburg, Germany. stefan.kopfmann@gmx.de.
Stefanie K RoeschFaculty of Biology, Institute of Biology 3, Genetics and Experimental Bioinformatics, University of Freiburg, Schänzlestr. 1, D-79104 Freiburg, Germany. steffi-roesch@gmx.de.
Wolfgang R HessFaculty of Biology, Institute of Biology 3, Genetics and Experimental Bioinformatics, University of Freiburg, Schänzlestr. 1, D-79104 Freiburg, Germany. wolfgang.hess@biologie.uni-freiburg.de.
University of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial toxin-antitoxin (TA) systems are genetic elements, which are encoded by plasmid as well as chromosomal loci. They mediate plasmid and genomic island maintenance through post-segregational killing mechanisms but may also have milder effects, acting as mobile stress response systems that help certain cells of a population in persisting adverse growth conditions. Very few cyanobacterial TA system have been characterized thus far. In this work, we focus on the cyanobacterium Synechocystis 6803, a widely used model organism. We expand the number of putative Type II TA systems from 36 to 69 plus seven stand-alone components. Forty-seven TA pairs are located on the chromosome and 22 are plasmid-located. Different types of toxins are associated with various antitoxins in a mix and match principle. According to protein domains and experimental data, 81% of all toxins in Synechocystis 6803 likely exhibit RNase activity, suggesting extensive potential for toxicity-related RNA degradation and toxin-mediated transcriptome remodeling. Of particular interest is the Ssr8013-Slr8014 system encoded on plasmid pSYSG, which is part of a larger defense island or the pSYSX system Slr6056-Slr6057, which is linked to a bacterial ubiquitin-like system. Consequently, Synechocystis 6803 is one of the most prolific sources of new information about these genetic elements.

Indexed as

AntitoxinsBacterial ToxinsChromosomes, BacterialGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicProtein DomainsRibonucleasesRNA, BacterialRNA, MessengerRNA StabilityStructure-Activity RelationshipSynechocystisTime FactorsAntitoxinsBacterial ToxinsRibonucleasesRNA, BacterialRNA, Messengerbacterial toxinscibonucleasecyanobacteriahydrogenasePIN-domainRNA degradationRNA interferaseRNA turnovertoxin–antitoxinVapC

Identifiers

PMID27455323
PMCPMC4963859
OpenAlexW2505933229

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.