Evidence map›Paper›PMID 27455049›Full record

ArticlePloS one2016

Direct Characterization of Transcription Elongation by RNA Polymerase I.

Suleyman Ucuncuoglu, Krysta L Engel, Prashant K Purohit, David D Dunlap, David A Schneider, Laura Finzi

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Detecting DNA Loops Using Tethered Particle Motion.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Suleyman UcuncuogluPhysics Department, Emory University, Atlanta, GA, 30322, United States of America.
Krysta L EngelBiochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL, 35294, United States of America.
Prashant K PurohitDepartment of Mechanical Engineering and Applied Mechanics, University of Pennsylvania, Philadelphia, PA, 19104, United States of America.
David D DunlapPhysics Department, Emory University, Atlanta, GA, 30322, United States of America.
David A SchneiderBiochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL, 35294, United States of America.
Laura FinziPhysics Department, Emory University, Atlanta, GA, 30322, United States of America.ORCID http://orcid.org/0000-0003-1173-5339

Funding

The lambda bacteriophage regulatory loopR01GM084070 · NIGMS · EMORY UNIVERSITY · PI FINZI, LAURA · 2009 to 2021
$4.1M
Control of RNA polymerase I transcription initiation and elongationR01GM084946 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SCHNEIDER, DAVID ALAN · 2009 to 2020
$3.8M
NIGMS NIH HHS R01 GM084070NIGMS NIH HHS R01 GM084946
6 · The paper itself

Abstract

RNA polymerase I (Pol I) transcribes ribosomal DNA and is responsible for more than 60% of transcription in a growing cell. Despite this fundamental role that directly impacts cell growth and proliferation, the kinetics of transcription by Pol I are poorly understood. This study provides direct characterization of S. Cerevisiae Pol I transcription elongation using tethered particle microscopy (TPM). Pol I was shown to elongate at an average rate of approximately 20 nt/s. However, the maximum speed observed was, in average, about 60 nt/s, comparable to the rate calculated based on the in vivo number of active genes, the cell division rate and the number of engaged polymerases observed in EM images. Addition of RNA endonucleases to the TPM elongation assays enhanced processivity. Together, these data suggest that additional transcription factors contribute to efficient and processive transcription elongation by RNA polymerase I in vivo.

Indexed as

Gene Expression RegulationTranscription Elongation, GeneticKineticsMicroscopyMolecular ImagingRNA InterferenceRNA Polymerase ISaccharomyces cerevisiaeTranscription, GeneticRNA Polymerase I

Identifiers

PMID27455049
PMCPMC4959687

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.