Evidence map›Paper›PMID 27454343›Full record

ArticleMolecular immunology2016

Regulation of SATB1 during thymocyte development by TCR signaling.

Kamalvishnu P Gottimukkala, Rahul Jangid, Indumathi Patta, Dil Afroz Sultana, Archna Sharma, Jyoti Misra-Sen, Sanjeev Galande

Abstract read
In one paragraph

Article in Molecular immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kamalvishnu P GottimukkalaIndian Institute of Science Education and Research, Pune 411008, India.
Rahul JangidIndian Institute of Science Education and Research, Pune 411008, India.
Indumathi PattaIndian Institute of Science Education and Research, Pune 411008, India.
Dil Afroz SultanaNational Institute on Aging, NIH and School of Medicine Immunology Graduate Program, Johns Hopkins University, Baltimore, MD, USA.
Archna SharmaNational Institute on Aging, NIH and School of Medicine Immunology Graduate Program, Johns Hopkins University, Baltimore, MD, USA.
Jyoti Misra-SenNational Institute on Aging, NIH and School of Medicine Immunology Graduate Program, Johns Hopkins University, Baltimore, MD, USA.
Sanjeev GalandeIndian Institute of Science Education and Research, Pune 411008, India; National Centre for Cell Science, Ganeshkhind, Pune 411007, India. Electronic address: sanjeev@iiserpune.ac.in.
Indian Institute of Science Education and Research Pune · INJohns Hopkins University · USNational Institute on Aging · US

Funding

Intramural NIH HHS Z99 AG999999
6 · The paper itself

Abstract

T lymphocyte development and differentiation is a multi-step process that begins in the thymus and completed in the periphery. Sequential development of thymocytes is dependent on T cell receptor (TCR) signaling and an array of transcription factors. In this study we show that special AT-rich binding protein 1 (SATB1), a T lineage-enriched chromatin organizer and regulator, is induced in response to TCR signaling during early thymocyte development. SATB1 expression profile coincides with T lineage commitment and upregulation of SATB1 correlates with positive selection of thymocytes. CD4 thymocytes exhibit a characteristic bimodal expression pattern that corresponds to immature and mature CD4 thymocytes. We also demonstrate that GATA3, the key transcriptional regulator of αβ T cells positively regulates SATB1 expression in thymocytes suggesting an important role for SATB1 during T cell development.

Indexed as

AnimalsCD4-Positive T-LymphocytesCell Adhesion Molecules, NeuronalCell DifferentiationChromatin ImmunoprecipitationFlow CytometryGATA3 Transcription FactorGene Expression ProfilingGene Expression RegulationImmunoblottingMiceMice, Inbred C57BLReceptors, Antigen, T-CellSignal TransductionThymocytesTranscriptomeCell Adhesion Molecules, NeuronalGata3 protein, mouseGATA3 Transcription FactorReceptors, Antigen, T-CellStab1 protein, mouseGATA-3SATB1SignalingT cell receptor

Identifiers

PMID27454343
PMCPMC6612261
OpenAlexW2475427040

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.