Evidence map›Paper›PMID 27454292›Full record

ArticleThe Journal of clinical investigation2016

Stem-loop binding protein is a multifaceted cellular regulator of HIV-1 replication.

Ming Li, Lynne D Tucker, John M Asara, Collins K Cheruiyot, Huafei Lu, Zhijin J Wu, Michael C Newstein, Mark S Dooner, Jennifer Friedman, Michelle A Lally and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Ming Li
Lynne D Tucker
John M Asara
Collins K Cheruiyot
Huafei Lu
Zhijin J Wu
Michael C Newstein
Mark S Dooner
Jennifer Friedman
Michelle A Lally
Bharat Ramratnam
Brown University · USBeth Israel Deaconess Medical Center · USMilford Elementary School · USProvidence College · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI LARRY K BROWN · 1998 to 2026
$51.7M
Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
UCP2 expression in colon cancerP20RR017695 · NCRR · RHODE ISLAND HOSPITAL (PROVIDENCE, RI) · PI RAMRATNAM, BHARAT · 2002 to 2011
$15.0M
Statistics and Data Management P20GM104317 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI PAYNE, BARBARA · 2013 to 2017
$9.8M
HIV and Other Infectious Consequences of Substance UseT32DA013911 · NIDA · MIRIAM HOSPITAL · PI TRACI C GREEN, JOSIAH D RICH · 2001 to 2026
$9.6M
TYORISINE PHOSPHATASE SHP2 IN HEMATOPOIETIC STEM CELL PROPERTY MAINTENANCEP20RR025179 · NCRR · RHODE ISLAND HOSPITAL · PI ALIOTTA, JASON M · 2009 to 2011
$6.4M
COBRE Center for Cancer Research DevelopmentP30GM110759 · NIGMS · RHODE ISLAND HOSPITAL · PI RESNICK, MURRAY B · 2015 to 2019
$6.3M
COBRE Center for Cancer Research DevelopmentP20GM103421 · NIGMS · RHODE ISLAND HOSPITAL · PI RAMRATNAM, BHARAT · 2012 to 2013
$4.5M
Reproductive Hormones and their impact on HIV-1 acquisitionR01HD072693 · NICHD · RHODE ISLAND HOSPITAL · PI CU-UVIN, SUSAN, GUPTA, PHALGUNI · 2012 to 2016
$2.3M
Studies in HIV-1 Pathogenesis and TransmissionK24HD080539 · NICHD · RHODE ISLAND HOSPITAL · PI RAMRATNAM, BHARAT · 2014 to 2018
$807k
ARRA NIH HHSNCI NIH HHS P01 CA120964NCI NIH HHS P30 CA006516NCRR NIH HHS P20 RR017695NCRR NIH HHS P20 RR025179NIAID NIH HHS P30 AI042853NICHD NIH HHS K24 HD080539NICHD NIH HHS R01 HD072693NIDA NIH HHS T32 DA013911NIGMS NIH HHS P20 GM103421NIGMS NIH HHS P20 GM104317NIGMS NIH HHS P30 GM110759
6 · The paper itself

Abstract

A rare subset of HIV-1-infected individuals is able to maintain plasma viral load (VL) at low levels without antiretroviral treatment. Identifying the mechanisms underlying this atypical response to infection may lead to therapeutic advances for treating HIV-1. Here, we developed a proteomic analysis to compare peripheral blood cell proteomes in 20 HIV-1-infected individuals who maintained either high or low VL with the aim of identifying host factors that impact HIV-1 replication. We determined that the levels of multiple histone proteins were markedly decreased in cohorts of individuals with high VL. This reduction was correlated with lower levels of stem-loop binding protein (SLBP), which is known to control histone metabolism. Depletion of cellular SLBP increased promoter engagement with the chromatin structures of the host gene high mobility group protein A1 (HMGA1) and viral long terminal repeat (LTR), which led to higher levels of HIV-1 genomic integration and proviral transcription. Further, we determined that TNF-α regulates expression of SLBP and observed that plasma TNF-α levels in HIV-1-infected individuals correlated directly with VL levels and inversely with cellular SLBP levels. Our findings identify SLBP as a potentially important cellular regulator of HIV-1, thereby establishing a link between histone metabolism, inflammation, and HIV-1 infection.

Indexed as

Viral LoadVirus ReplicationCell CycleChromatinHeLa CellsHistonesHIV-1HIV InfectionsHMGA1a ProteinHumansInflammationLeukocytes, MononuclearmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsPromoter Regions, GeneticProtein DomainsChromatinHistonesHMGA1a ProteinmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsProteomeSLBP protein, humanTumor Necrosis Factor-alpha

Identifiers

PMID27454292
PMCPMC4966322
OpenAlexW2487386810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.