Evidence map›Paper›PMID 27453397›Full record

ArticleNature communications2016

Common variants upstream of KDR encoding VEGFR2 and in TTC39B associate with endometriosis.

Valgerdur Steinthorsdottir, Gudmar Thorleifsson, Kristrun Aradottir, Bjarke Feenstra, Asgeir Sigurdsson, Lilja Stefansdottir, Anna M Kristinsdottir, Florian Zink, Gisli H Halldorsson, Nete Munk Nielsen and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Endometriosis: Challenges in Clinical Molecular Diagnostics and Treatment.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Defining the genetic profile of endometriosis.Experimental and therapeutic medicine · 2019
    Review
  17. Villainous role of estrogen in macrophage-nerve interaction in endometriosis.Reproductive biology and endocrinology : RB&E · 2018
    Review
  18. International journal of clinical and experimental pathology · 2018
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Valgerdur SteinthorsdottirdeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Gudmar ThorleifssondeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Kristrun AradottirDepartment of Obstetrics and Gynecology, Landspitali University Hospital, 101 Reykjavik, Iceland.
Bjarke FeenstraDepartment of Epidemiology Research, Statens Serum Institut, DK-2300 Copenhagen, Denmark.ORCID http://orcid.org/0000-0003-1478-649X
Asgeir SigurdssondeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Lilja StefansdottirdeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Anna M KristinsdottirdeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Florian ZinkdeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Gisli H HalldorssondeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Nete Munk NielsenDepartment of Epidemiology Research, Statens Serum Institut, DK-2300 Copenhagen, Denmark.
Frank GellerDepartment of Epidemiology Research, Statens Serum Institut, DK-2300 Copenhagen, Denmark.
Mads MelbyeDepartment of Epidemiology Research, Statens Serum Institut, DK-2300 Copenhagen, Denmark.
Daniel F GudbjartssondeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Reynir T GeirssonDepartment of Obstetrics and Gynecology, Landspitali University Hospital, 101 Reykjavik, Iceland.
Unnur ThorsteinsdottirdeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
Kari StefanssondeCODE Genetics/Amgen, 101 Reykjavik, Iceland.
deCODE Genetics (Iceland) · ISStatens Serum Institut · DKReykjavík University · IS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a genome-wide association scan (GWAS) of endometriosis using 25.5 million sequence variants detected through whole-genome sequencing (WGS) of 8,453 Icelanders and imputed into 1,840 cases and 129,016 control women, followed by testing of associated variants in Danish samples. Here we report the discovery of a new endometriosis susceptibility locus on 4q12 (rs17773813[G], OR=1.28; P=3.8 × 10(-11)), upstream of KDR encoding vascular endothelial growth factor receptor 2 (VEGFR2). The variant correlates with disease severity (P=0.0046) when moderate/severe endometriosis cases are tested against minimal/mild cases. We further report association of rs519664[T] in TTC39B on 9p22 with endometriosis (P=4.8 × 10(-10); OR=1.29). The involvement of KDR in endometriosis risk highlights the importance of the VEGF pathway in the pathogenesis of the disease.

Indexed as

Genetic Predisposition to DiseaseChromosomes, Human, Pair 17EndometriosisFemaleGenetic LociGenome-Wide Association StudyHumansLipoproteins, HDLNeoplasm ProteinsPolymorphism, Single NucleotideVascular Endothelial Growth Factor Receptor-2KDR protein, humanLipoproteins, HDLNeoplasm ProteinsTTC39B protein, humanVascular Endothelial Growth Factor Receptor-2

Identifiers

PMID27453397
PMCPMC4962463
OpenAlexW2489788488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.