Evidence map›Paper›PMID 27452606›Full record

ArticleScientific reports2016

A simple Gateway-assisted construction system of TALEN genes for plant genome editing.

Hiroaki Kusano, Hitomi Onodera, Miho Kihira, Hiromi Aoki, Hikaru Matsuzaki, Hiroaki Shimada

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Recent Advances in Molecular Improvement for Potato Tuber Traits.International journal of molecular sciences · 2022
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Efficient genome engineering using Platinum TALEN in potato.Plant biotechnology (Tokyo, Japan) · 2019
    Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hiroaki KusanoDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.
Hitomi OnoderaDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.
Miho KihiraDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.
Hiromi AokiDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.
Hikaru MatsuzakiDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.
Hiroaki ShimadaDepartment of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TALEN is an artificial nuclease being applied for sequence-specific genome editing. For the plant genome editing, a pair of TALEN genes is expressed in the cells, and a binary plasmid for Agrobacterium-mediated transformation should be assembled. We developed a novel procedure using the Gateway-assisted plasmids, named Emerald-Gateway TALEN system. We constructed entry vectors, pPlat plasmids, for construction of a desired TALEN gene using Platinum Gate TALEN kit. We also created destination plasmid, pDual35SGw1301, which allowed two TALEN genes to both DNA strands to recruit using Gateway technology. Resultant TALEN genes were evaluated by the single-strand annealing (SSA) assay in E. coli cells. By this assay, the TALENs recognized the corresponding targets in the divided luciferase gene, and induced a specific recombination to generate an active luciferase gene. Using the TALEN genes constructed, we created a transformant potato cells in which a site-specific mutation occurred at the target site of the GBSS gene. This suggested that our system worked effectively and was applicable as a convenient tool for the plant genome editing.

Indexed as

Gene EditingAgrobacteriumEndonucleasesEscherichia coliGene Expression Regulation, PlantGenetic VectorsGenome, PlantPlasmidsSolanum tuberosumStarch SynthaseTranscription Activator-Like Effector NucleasesEndonucleasesStarch SynthaseTranscription Activator-Like Effector Nucleases

Identifiers

PMID27452606
PMCPMC4958979

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.