Evidence map›Paper›PMID 27451393›Full record

ArticleThe Journal of biological chemistry2016

Role of Inner Nuclear Membrane Protein Complex Lem2-Nur1 in Heterochromatic Gene Silencing.

Shahid Banday, Zeenat Farooq, Romana Rashid, Ehsaan Abdullah, Mohammad Altaf

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  8. A Yeast Mitotic Tale for the Nucleus and the Vacuoles to Embrace.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. The Diverse Cellular Functions of Inner Nuclear Membrane Proteins.Cold Spring Harbor perspectives in biology · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shahid BandayFrom the Chromatin and Epigenetics Laboratory, Department of Biotechnology, University of Kashmir, Srinagar, Jammu and Kashmir 190006, India.
Zeenat FarooqFrom the Chromatin and Epigenetics Laboratory, Department of Biotechnology, University of Kashmir, Srinagar, Jammu and Kashmir 190006, India.
Romana RashidFrom the Chromatin and Epigenetics Laboratory, Department of Biotechnology, University of Kashmir, Srinagar, Jammu and Kashmir 190006, India.
Ehsaan AbdullahFrom the Chromatin and Epigenetics Laboratory, Department of Biotechnology, University of Kashmir, Srinagar, Jammu and Kashmir 190006, India.
Mohammad AltafFrom the Chromatin and Epigenetics Laboratory, Department of Biotechnology, University of Kashmir, Srinagar, Jammu and Kashmir 190006, India altafbhat@uok.edu.in.
University of Kashmir · IN

Funding

RNAi-mediated Targeting of Hetorochromatin AssemblyR01GM072805 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MOAZED, DANESH · 2005 to 2025
$6.9M
NIGMS NIH HHS R01 GM072805
6 · The paper itself

Abstract

Heterochromatin in the fission yeast Schizosaccharomyces pombe is clustered at the nuclear periphery and interacts with a number of nuclear membrane proteins. However, the significance and the factors that sequester heterochromatin at the nuclear periphery are not fully known. Here, we report that an inner nuclear membrane protein complex Lem2-Nur1 is essential for heterochromatin-mediated gene silencing. We found that Lem2 is physically associated with another inner nuclear membrane protein, Nur1, and deletion of either lem2 or nur1 causes silencing defect at centromeres, telomeres, and rDNA loci. We analyzed the genome-wide association of Lem2 using ChIP sequencing and we found that it binds to the central core region of centromeres, in striking contrast to Chp1, a component of pericentromeric heterochromatin, which binds H3K9me-rich chromatin in neighboring sequences. The recruitment of Lem2 and Nur1 to silent regions of the genome is dependent on H3K9 methyltransferase, Clr4. Finally, we show that the Lem2-Nur1 complex regulates the local balance between the underln]Snf2/HDAC-containing repressor complex (SHREC) histone deacetylase complex and the anti-silencing protein Epe1. These findings uncover a novel role for Lem2-Nur1 as a key functional link between localization at the nuclear periphery and heterochromatin-mediated gene silencing.

Indexed as

Gene Expression Regulation, FungalGene SilencingHeterochromatinMultiprotein ComplexesNuclear EnvelopeSchizosaccharomycesSchizosaccharomyces pombe ProteinsHeterochromatinMultiprotein ComplexesSchizosaccharomyces pombe Proteinschromatinchromatin, gene silencinggene silencingheterochromatinhistone modificationnuclear envelope

Identifiers

PMID27451393
PMCPMC5025688
OpenAlexW2521026725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.