Evidence map›Paper›PMID 27450017›Full record

ArticleTuberculosis (Edinburgh, Scotland)2016

Detection and characterization of drug-resistant conferring genes in Mycobacterium tuberculosis complex strains: A prospective study in two distant regions of Ghana.

I D Otchere, A Asante-Poku, S Osei-Wusu, A Baddoo, E Sarpong, A H Ganiyu, S Y Aboagye, A Forson, F Bonsu, A I Yahayah and 3 more

Open access · hybridAbstract readMulticenter Study
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Genetic diversities ofAccess microbiology · 2024
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  16. Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of recent household-related transmission of tuberculosis in Ghana.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
    Article
  17. Phylogenomics ofMicrobial genomics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

I D OtchereNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana; Department of Biochemistry, Cell and Molecular Biology, University of Ghana, Accra, Ghana.
A Asante-PokuNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
S Osei-WusuNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
A BaddooChest Clinic, Korle-BU Teaching Hospital, Accra, Ghana.
E SarpongNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
A H GaniyuNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
S Y AboagyeNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
A ForsonChest Clinic, Korle-BU Teaching Hospital, Accra, Ghana.
F BonsuGhana Health Service, Ministry of Health, Accra, Ghana.
A I YahayahChest Department, Tamale Teaching Hospital, Tamale, Ghana.
K KoramNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
S GagneuxSwiss TPH, Basel, Switzerland; University of Basel, Basel, Switzerland.
D Yeboah-ManuNoguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana. Electronic address: Dyeboah-Manu@noguchi.ug.edu.gh.
University of Ghana · GHKorle Bu Teaching Hospital · GHMinistry of Health · GHSwiss Tropical and Public Health Institute · CHTamale Teaching Hospital · GH

Funding

Wellcome Trust
6 · The paper itself

Abstract

We spoligotyped and screened 1490 clinical Mycobacterium tuberculosis complex strains from Northern and Greater Accra regions of Ghana against INH and RIF using the microplate alamar blue phenotypic assay. Specific drug resistance associated genetic elements of drug resistant strains were analyzed for mutations. A total of 111 (7.5%), 10 (0.7%) and 40 (2.6%) were mono-resistant to INH, RIF, and MDR, respectively. We found the Ghana spoligotype to be associated with drug resistance (INH: 22.1%; p = 0.0000, RIF: 6.2%; p = 0.0103, MDR: 4.6%; p = 0.0240) as compared to the Cameroon spoligotype (INH: 6.7%, RIF: 2.4%, MDR: 1.6%). The propensity for an isolate to harbour katG S315T mutation was higher in M. tuberculosis (75.8%) than Mycobacterium africanum (51.7%) (p = 0.0000) whereas the opposite was true for inhApro mutations; MAF (48.3%) compared to MTBSS (26.7%) (p = 0.0419). We identified possible novel compensatory INH resistance mutations in inhA (G204D) and ahpCpro (-88G/A and -142G/A) and a novel ndh mutation K32R. We detected two possible rpoC mutations (G332R and V483G), which occurred independently with rpoB S450L, respectively. The study provides the first evidence that associate the Ghana spoligotype with DR-TB and calls for further genome analyses for proper classification of this spoligotype and to explore for fitness implications and mechanisms underlying this observation.

Indexed as

MutationAntitubercular AgentsBacterial ProteinsDNA Mutational AnalysisDrug Resistance, Multiple, BacterialFemaleGenotypeGhanaHumansMaleMicrobial Sensitivity TestsMiddle AgedMycobacterium tuberculosisPhenotypeProspective StudiesSputumAntitubercular AgentsBacterial ProteinsCompensatoryDrug resistantMutationsSpoligotypeVirulence

Identifiers

PMID27450017
PMCPMC4978697
OpenAlexW2413268109

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.