Evidence map›Paper›PMID 27449670›Full record

ArticleBMC systems biology2016

Nuclear pores enable sustained perinuclear calcium oscillations.

Teresa Vaz Martins, Matthew J Evans, Derin B Wysham, Richard J Morris

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Teresa Vaz MartinsComputational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK. Teresa.VazMartins@jic.ac.uk.
Matthew J EvansComputational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK.
Derin B WyshamMathematics Department, Wenatchee Valley College, Wenatchee, USA.
Richard J MorrisComputational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK.
Norwich Research Park · GBJohn Innes Centre · GBWenatchee Valley College · US

Funding

Biotechnology and Biological Sciences Research Council BB/J018627/1Biotechnology and Biological Sciences Research Council BBS/E/J/00000611
6 · The paper itself

Abstract

backgroundCalcium signalling relies on the flux of calcium ions across membranes yet how signals in different compartments are related remains unclear. In particular, similar calcium signals on both sides of the nuclear envelope have been reported and attributed to passive diffusion through nuclear pores. However, observed differing cytosolic and nucleosolic calcium signatures suggest that the signalling machinery in these compartments can act independently.

resultsWe adapt the fire-diffuse-fire model to investigate the generation of perinuclear calcium oscillations. We demonstrate that autonomous spatio-temporal calcium patterns are still possible in the presence of nuclear and cytosolic coupling via nuclear pores. The presence or absence of this autonomy is dependent upon the strength of the coupling and the maximum firing rate of an individual calcium channel. In all cases, coupling through the nuclear pores enables robust signalling with respect to changes in the diffusion constant.

conclusionsWe show that contradictory interpretations of experimental data with respect to the autonomy of nuclear calcium oscillations can be reconciled within one model, with different observations being a consequence of varying nuclear pore permeabilities for calcium and refractory conditions of channels. Furthermore, our results provide an explanation for why calcium oscillations on both sides of the nuclear envelope may be beneficial for sustained perinuclear signaling.

Indexed as

Calcium SignalingModels, BiologicalDiffusionMembrane MicrodomainsNuclear EnvelopeNuclear PoreCalcium signallingFire-diffuse-fireNuclear pores

Identifiers

PMID27449670
PMCPMC4957432
OpenAlexW2478369112

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.