Evidence map›Paper›PMID 27449348›Full record

ArticleRNA biology2016

Dual-function sRNA encoded peptide SR1P modulates moonlighting activity of B. subtilis GapA.

Matthias Gimpel, Sabine Brantl

Abstract read
In one paragraph

Article in RNA biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Small proteins in Gram-positive bacteria.FEMS microbiology reviews · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Understanding small ORF diversity through a comprehensive transcription feature classification.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Review
  13. Microorganisms · 2021
    Review
  14. Moonlighting inMicroorganisms · 2021
    Review
  15. Article
  16. Article
  17. Intermolecular Communication inFrontiers in molecular biosciences · 2020
    Review
  18. Review
  19. Article
  20. Dual-Function RNAs.Microbiology spectrum · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Matthias Gimpela AG Bakteriengenetik, Lehrstuhl für Genetik, Friedrich-Schiller-Universität Jena , Philosophenweg , Jena , Germany.
Sabine Brantla AG Bakteriengenetik, Lehrstuhl für Genetik, Friedrich-Schiller-Universität Jena , Philosophenweg , Jena , Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SR1 is a dual-function sRNA from B. subtilis that acts as a base-pairing regulatory RNA and as a peptide-encoding mRNA. Both functions of SR1 are highly conserved. Previously, we uncovered that the SR1 encoded peptide SR1P binds the glycolytic enzyme GapA resulting in stabilization of gapA mRNA. Here, we demonstrate that GapA interacts with RNases Y and J1, and this interaction was RNA-independent. About 1% of GapA molecules purified from B. subtilis carry RNase J1 and about 2% RNase Y. In contrast to the GapA/RNase Y interaction, the GapA/RNaseJ1 interaction was stronger in the presence of SR1P. GapA/SR1P-J1/Y displayed in vitro RNase activity on known RNase J1 substrates. Moreover, the RNase J1 substrate SR5 has altered half-lives in a ΔgapA strain and a Δsr1 strain, suggesting in vivo functions of the GapA/SR1P/J1 interaction. Our results demonstrate that the metabolic enzyme GapA moonlights in recruiting RNases while GapA bound SR1P promotes binding of RNase J1 and enhances its activity.

Indexed as

Bacillus subtilisBacterial ProteinsEndoribonucleasesMultiprotein ComplexesOperonPeptidesProtein BindingRNA-Binding ProteinsRNA CleavageRNA, MessengerRNA StabilitySubstrate SpecificityBacterial ProteinsEndoribonucleasesMultiprotein ComplexesPeptidesRNA-Binding ProteinsRNA, MessengerB. subtilisdual function sRNAGAPDHmoonlighting proteinRNase J1RNase Ysmall regulatory RNA

Identifiers

PMID27449348
PMCPMC5013986

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.