Evidence map›Paper›PMID 27448395›Full record

ArticleBMC medical genetics2016

Breakpoints and deleted genes identification of ring chromosome 18 in a Chinese girl by whole-genome low-coverage sequencing: a case report study.

Hui Yao, Chuanchun Yang, Xiaoli Huang, Luhong Yang, Wei Zhao, Dan Yin, Yuan Qin, Feng Mu, Lin Liu, Ping Tian and 2 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Mosaic ring chromosome 18 in a Chinese child with epilepsy: a case report and review of the literature.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Hui YaoWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Chuanchun YangBGI-Shenzhen, Shenzhen, 518083, China.
Xiaoli HuangWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Luhong YangWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Wei ZhaoBGI-Wuhan, Wuhan, 430075, China.
Dan YinBGI-Wuhan, Wuhan, 430075, China.
Yuan QinWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Feng MuBGI-Wuhan, Wuhan, 430075, China.
Lin LiuBGI-Wuhan, Wuhan, 430075, China.
Ping TianWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Zhisheng LiuWuhan Medical Care Center for Women and Children, Wuhan, 430015, China.
Yun YangBGI-Wuhan, Wuhan, 430075, China. @genomics.cn.
Wuhan Medical Center for Women and Children · CNBGI Group (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRing chromosome 18 [r(18)] is formed by 18p- and 18q- partial deletion and generates a ring chromosome. Loss of critical genes on each arm of chromosome 18 may contribute to the specific phenotype, and the clinical spectrum varieties may heavily depend on the extent of the genomic deletion. The aim of this study is to identify the detailed breakpoints location and the deleted genes result from the r18. CASE PRESENTATION: Here we describe a detailed diagnosis of a seven-year-old Chinese girl with a ring chromosome 18 mutation by a high-throughput whole-genome low-coverage sequencing approach without karyotyping and other cytogenetic analysis. This method revealed two fragment heterozygous deletions of 18p and 18q, and further localized the detailed breakpoint sites and fusion, as well as the deleted genes.

conclusionsTo our knowledge, this is the first report of a ring chromosome 18 patient in China analyzed by whole-genome low-coverage sequencing approach. Detailed breakpoints location and deleted genes identification help to estimate the risk of the disease in the future. The data and analysis here demonstrated the feasibility of next-generation sequencing technologies for chromosome structure variation including ring chromosome in an efficient and cost effective way.

Indexed as

Gene DeletionRing ChromosomesChildChinaChromosomes, Human, Pair 18Cytogenetic AnalysisFemaleHigh-Throughput Nucleotide SequencingHumansKaryotypeMagnetic Resonance ImagingPhenotypePituitary GlandSequence Analysis, DNADetailed breakpointsDetailed diagnosisRing chromosomeWhole-genome low-coverage sequencing

Identifiers

PMID27448395
PMCPMC4957311
OpenAlexW2500279891

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.