Evidence map›Paper›PMID 27447867›Full record

ArticleMolecular genetics and genomics : MGG2016

Expression of resistance gene analogs in woodland strawberry (Fragaria vesca) during infection with Phytophthora cactorum.

Xiao-Ren Chen, May Bente Brurberg, Abdelhameed Elameen, Sonja Sletner Klemsdal, Inger Martinussen

Open access · hybridAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

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  15. De Novo Transcriptome Sequencing of the Deep-Sea-Derived FungusInternational journal of molecular sciences · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Xiao-Ren ChenNorwegian Institute of Bioeconomy Research, Box 115, 1431, Ås, Norway.
May Bente BrurbergNorwegian Institute of Bioeconomy Research, Box 115, 1431, Ås, Norway.
Abdelhameed ElameenNorwegian Institute of Bioeconomy Research, Box 115, 1431, Ås, Norway.
Sonja Sletner KlemsdalNorwegian Institute of Bioeconomy Research, Box 115, 1431, Ås, Norway.
Inger MartinussenNorwegian Institute of Bioeconomy Research, Box 115, 1431, Ås, Norway. inger.martinussen@nibio.no.
Norwegian Institute of Bioeconomy Research · NOYangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Important losses in strawberry production are often caused by the oomycete Phytophthora cactorum, the causal agent of crown rot. However, very limited studies at molecular levels exist of the mechanisms related to strawberry resistance against this pathogen. To begin to rectify this situation, a PCR-based approach (NBS profiling) was used to isolate strawberry resistance gene analogs (RGAs) with altered expression in response to P. cactorum during a time course (2, 4, 6, 24, 48, 96 and 192 h post-infection). Twenty-three distinct RGA fragments of the NB-LRR type were identified from a resistance genotype (Bukammen) of the wild species Fragaria vesca. The gene transcriptional profiles after infection showed that the response of most RGAs was quicker and stronger in the resistance genotype (Bukammen) than in the susceptible one (FDP821) during the early infection stage. The transcriptional patterns of one RGA (RGA109) were further monitored and compared during the P. cactorum infection of two pairs of resistant and susceptible genotype combinations (Bukammen/FDP821 and FDR1218/1603). The 5' end sequence was cloned, and its putative protein was characteristic of NBS-LRR R protein. Our results yielded a first insight into the strawberry RGAs responding to P. cactorum infection at molecular level.

Indexed as

Disease ResistanceCloning, MolecularFragariaGene Expression ProfilingGene Expression Regulation, PlantPhytophthoraPlant DiseasesPlant ProteinsSequence Analysis, DNAPlant ProteinsCrown rot diseaseNBS-LRR genesPhytophthora cactorumResistance gene analogsStrawberry

Identifiers

PMID27447867
PMCPMC4990625
OpenAlexW2499345159

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.