Evidence map›Paper›PMID 27447865›Full record

ArticleNature communications2016

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.

Marcus C Chibucos, Sameh Soliman, Teclegiorgis Gebremariam, Hongkyu Lee, Sean Daugherty, Joshua Orvis, Amol C Shetty, Jonathan Crabtree, Tracy H Hazen, Kizee A Etienne and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 135 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Chronic cutaneous and mucosal mucormycosis:Emerging microbes & infections · 2025
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Mucormycosis: A Rare disease to Notifiable Disease.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Review
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Marcus C ChibucosDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.ORCID http://orcid.org/0000-0001-9586-0780
Sameh SolimanDivision of Infectious Diseases, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California 90502, USA.
Teclegiorgis GebremariamDivision of Infectious Diseases, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California 90502, USA.
Hongkyu LeeDivision of Infectious Diseases, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California 90502, USA.
Sean DaughertyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Joshua OrvisInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Amol C ShettyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Jonathan CrabtreeInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Tracy H HazenDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Kizee A EtienneFungal Reference Laboratory, Mycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Priti KumariInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Timothy D O'ConnorInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
David A RaskoDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Scott G FillerDivision of Infectious Diseases, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California 90502, USA.
Claire M FraserInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Shawn R LockhartFungal Reference Laboratory, Mycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Christopher D SkoryNational Center for Agriculture Utilization Research, USDA, Agricultural Research Service, Peoria, Illinois 61604, USA.
Ashraf S IbrahimDivision of Infectious Diseases, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California 90502, USA.
Vincent M BrunoDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
University of Maryland, Baltimore · USThe Lundquist Institute · USCenters for Disease Control and Prevention · USUniversity of California, Los Angeles · USAgricultural Research Service · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RASKO, DAVID A · 2014 to 2023
$36.5M
Novel Toxins and Receptors in Mucormycosis Pathogenesis and TreatmentR01AI063503 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI IBRAHIM, ASHRAF S. · 2006 to 2025
$7.3M
Candida albicans Epithelial Cell Interactions and Oropharyngeal DiseaseR01DE017088 · NIDCR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI FILLER, SCOTT G · 2005 to 2014
$3.4M
Candida Invasion of Endothelium and VirulenceR01AI054928 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI FILLER, SCOTT G · 2004 to 2013
$2.9M
Rapid Diagnostics for MucormycosisR41AI115907 · NIAID · VITALEX BIOSCIENCES, LLC · PI NASRALLA, MARWAN · 2015 to 2015
$151k
NCATS NIH HHS UL1 TR000124NIAID NIH HHS HHSN272200900009CNIAID NIH HHS R01 AI054928NIAID NIH HHS R01 AI063503NIAID NIH HHS R41 AI115907NIAID NIH HHS U19 AI110820NIDCR NIH HHS R01 DE017088
6 · The paper itself

Abstract

Mucormycosis is a life-threatening infection caused by Mucorales fungi. Here we sequence 30 fungal genomes, and perform transcriptomics with three representative Rhizopus and Mucor strains and with human airway epithelial cells during fungal invasion, to reveal key host and fungal determinants contributing to pathogenesis. Analysis of the host transcriptional response to Mucorales reveals platelet-derived growth factor receptor B (PDGFRB) signaling as part of a core response to divergent pathogenic fungi; inhibition of PDGFRB reduces Mucorales-induced damage to host cells. The unique presence of CotH invasins in all invasive Mucorales, and the correlation between CotH gene copy number and clinical prevalence, are consistent with an important role for these proteins in mucormycosis pathogenesis. Our work provides insight into the evolution of this medically and economically important group of fungi, and identifies several molecular pathways that might be exploited as potential therapeutic targets.

Indexed as

Genome, FungalA549 CellsAmidohydrolasesAmino Acid SequenceAnimalsBase SequenceFungal ProteinsGenes, FungalHumansMaleMice, Inbred ICRMolecular Sequence AnnotationMucoralesMucormycosisPhylogenyPolymorphism, Single NucleotideAmidohydrolaseschitin deacetylaseFungal Proteins

Identifiers

PMID27447865
PMCPMC4961843
OpenAlexW2496277719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.