Evidence map›Paper›PMID 27447739›Full record

ArticleNature communications2016

Phenotypes on demand via switchable target protein degradation in multicellular organisms.

Frederik Faden, Thomas Ramezani, Stefan Mielke, Isabel Almudi, Knud Nairz, Marceli S Froehlich, Jörg Höckendorff, Wolfgang Brandt, Wolfgang Hoehenwarter, R Jürgen Dohmen and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  10. Using CRL3Plant direct · 2022
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  16. Gene drive that results in addiction to a temperature-sensitive version of an essential gene triggers population collapse inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Frederik FadenIndependent Junior Research Group on Protein Recognition and Degradation, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, D-06120 Halle (Saale), Germany.
Thomas RamezaniUniversity Group at the Max Planck Institute for Plant Breeding Research (MPIPZ), Max Delbrück Laboratory, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany.
Stefan MielkeIndependent Junior Research Group on Protein Recognition and Degradation, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, D-06120 Halle (Saale), Germany.
Isabel AlmudiInstitute of Molecular Systems Biology (IMSB), Swiss Federal Institute of Technology (ETH), Wolfgang-Pauli-Strasse 16, CH-8093 Zurich, Switzerland.
Knud NairzInstitute of Molecular Systems Biology (IMSB), Swiss Federal Institute of Technology (ETH), Wolfgang-Pauli-Strasse 16, CH-8093 Zurich, Switzerland.
Marceli S FroehlichInstitute for Genetics, Biocenter, University of Cologne, Zülpicher Straße 47a, D-50674 Cologne, Germany.
Jörg HöckendorffInstitute for Genetics, Biocenter, University of Cologne, Zülpicher Straße 47a, D-50674 Cologne, Germany.
Wolfgang BrandtComputational Chemistry, Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, D-06120 Halle (Saale), Germany.
Wolfgang HoehenwarterProteomics Unit, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, Halle (Saale) D-06120, Germany.
R Jürgen DohmenInstitute for Genetics, Biocenter, University of Cologne, Zülpicher Straße 47a, D-50674 Cologne, Germany.
Arp SchnittgerUniversity Group at the Max Planck Institute for Plant Breeding Research (MPIPZ), Max Delbrück Laboratory, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany.
Nico DissmeyerIndependent Junior Research Group on Protein Recognition and Degradation, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, D-06120 Halle (Saale), Germany.
University of Cologne · DELeibniz Institute of Plant Biochemistry · DEÉcole Polytechnique Fédérale de Lausanne · CHMax Planck Institute for Plant Breeding Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phenotypes on-demand generated by controlling activation and accumulation of proteins of interest are invaluable tools to analyse and engineer biological processes. While temperature-sensitive alleles are frequently used as conditional mutants in microorganisms, they are usually difficult to identify in multicellular species. Here we present a versatile and transferable, genetically stable system based on a low-temperature-controlled N-terminal degradation signal (lt-degron) that allows reversible and switch-like tuning of protein levels under physiological conditions in vivo. Thereby, developmental effects can be triggered and phenotypes on demand generated. The lt-degron was established to produce conditional and cell-type-specific phenotypes and is generally applicable in a wide range of organisms, from eukaryotic microorganisms to plants and poikilothermic animals. We have successfully applied this system to control the abundance and function of transcription factors and different enzymes by tunable protein accumulation.

Indexed as

ProteolysisAnimalsArabidopsisCells, CulturedDrosophilaNicotianaPhenotypeSaccharomyces cerevisiaeSpecies SpecificityTemperature

Identifiers

PMID27447739
PMCPMC4961840
OpenAlexW2505875603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.