Evidence map›Paper›PMID 27447718›Full record

ArticlePloS one2016

Comparative Analysis of the Chrysanthemum Leaf Transcript Profiling in Response to Salt Stress.

Yin-Huan Wu, Tong Wang, Ke Wang, Qian-Yu Liang, Zhen-Yu Bai, Qing-Lin Liu, Yuan-Zhi Pan, Bei-Bei Jiang, Lei Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Comparative Physiological and Transcriptome Analysis ofInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Overexpression of a Multiprotein Bridging Factor 1 GeneInternational journal of molecular sciences · 2019
    Article
  8. Article
  9. ChrysanthemumInternational journal of molecular sciences · 2018
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yin-Huan WuDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Tong WangDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Ke WangDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Qian-Yu LiangDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Zhen-Yu BaiDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Qing-Lin LiuDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Yuan-Zhi PanDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Bei-Bei JiangDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Lei ZhangDepartment of Landscape Architecture, Sichuan Agricultural University, Chengdu, Sichuan, China.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salt stress has some remarkable influence on chrysanthemum growth and productivity. To understand the molecular mechanisms associated with salt stress and identify genes of potential importance in cultivated chrysanthemum, we carried out transcriptome sequencing of chrysanthemum. Two cDNA libraries were generated from the control and salt-treated samples (Sample_0510_control and Sample_0510_treat) of leaves. By using the Illumina Solexa RNA sequencing technology, 94 million high quality sequencing reads and 161,522 unigenes were generated and then we annotated unigenes through comparing these sequences to diverse protein databases. A total of 126,646 differentially expressed transcripts (DETs) were identified in leaf. Plant hormones, amino acid metabolism, photosynthesis and secondary metabolism were all changed under salt stress after the complete list of GO term and KEGG enrichment analysis. The hormone biosynthesis changing and oxidative hurt decreasing appeared to be significantly related to salt tolerance of chrysanthemum. Important protein kinases and major transcription factor families involved in abiotic stress were differentially expressed, such as MAPKs, CDPKs, MYB, WRKY, AP2 and HD-zip. In general, these results can help us to confirm the molecular regulation mechanism and also provide us a comprehensive resource of chrysanthemum under salt stress.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantTranscriptomeChrysanthemumComputational BiologyDatabases, GeneticGene OntologyGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPlant LeavesSalinitySalt ToleranceSignal TransductionStress, Physiological

Identifiers

PMID27447718
PMCPMC4957832
OpenAlexW2489999453

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.