Evidence map›Paper›PMID 27447098›Full record

ArticleGenetic testing and molecular biomarkers2016

Phenotypes of California CF Newborn Screen-Positive Children with CFTR 5T Allele by TG Repeat Length.

Danieli Barino Salinas, Colleen Azen, Suzanne Young, Thomas G Keens, Martin Kharrazi, Richard B Parad

Open access · greenAbstract read
In one paragraph

Article in Genetic testing and molecular biomarkers, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. The Role of Pancreatitis Risk Genes in Endocrine Insufficiency Development After Acute Pancreatitis in Children.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2024
    Observational
  4. Article
  5. High rates of anxiety detected in mothers of children with inconclusive cystic fibrosis screening results.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Inconclusive Diagnosis after Newborn Screening for Cystic Fibrosis.International journal of neonatal screening · 2020
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Danieli Barino Salinas1 Department of Pediatric Pulmonology, Keck School of Medicine, Children's Hospital Los Angeles, University of Southern California , Los Angeles, California.
Colleen Azen2 Department of Biostatics, Southern California Clinical and Translational Science Institute, Children's Hospital Los Angeles, University of Southern California , Los Angeles, California.
Suzanne Young3 Sequoia Foundation , La Jolla, California.
Thomas G Keens1 Department of Pediatric Pulmonology, Keck School of Medicine, Children's Hospital Los Angeles, University of Southern California , Los Angeles, California.
Martin Kharrazi4 Environmental Health Investigations Branch , California Department of Public Health, Richmond, California.
Richard B Parad5 Department of Pediatric Newborn Medicine, Brigham and Women's Hospital , Harvard Medical School, Boston, Massachusetts.
California Department of Public Health · USHarvard University · USSequoia Foundation · US

Funding

Mentored Career DevelopmentKL2TR001854 · NCATS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Elizabeth Rhea Erwin Burner, Amy Elizabeth West · 2016 to 2026
$9.0M
6 · The paper itself

Abstract

backgroundAt the cystic fibrosis transmembrane conductance regulator (CFTR) gene (IVS8)-(TG)m(T)n locus, a lower number of thymidines (legacy names 9T vs. 7T vs. 5T) and a higher number of (TG) repeats (TG-11 vs. 12 vs. 13) are associated with decreasing translation of functional CFTR protein in vitro.

methodsRetrospective cohort study comparing phenotypes of California CF newborn screen-positive children (followed 2-8 years) who had two CF-causing mutations (diagnosed as CF) with those who had one mutation from a panel of 40 CF-causing mutations (CF40mut) and one (IVS8)-(TG)11, 12, or 13-5T mutation detected by sequencing (diagnosed as CFTR-related metabolic syndrome [cRMS]).

resultsThe study included 428 children, of which 234 had two CF-causing mutations, and were used to compare with the other 194 children with one CF-causing mutation and one isolated 5T allele [CF40mut/(TG)13-5T = 21, CF40mut/(TG)12-5T = 85, and CF40mut/(TG)11-5T = 88]. Among children with CF40mut/(TG)13-5T, 38% were diagnosed with CF by 8 years, based on sweat chloride results and clinical presentation. Six percent of those with CF40mut/(TG)12-5T, and none with CF40mut/(TG)11-5T, reached diagnostic criteria.

conclusionsCFTR (IVS8)-(TG)m-5T allele (TG) tract length determination provides valuable information in predicting the risk of developing a CF phenotype. Of the three types of 5T alleles evaluated, screen-positive children with genotype CF40mut/(TG)13-5T progressed from CRMS to CF at a high rate, while there was little evidence of clinical disease in those with CF40mut/(TG)11-5T. Additional data from longer follow-up intervals are needed to fully understand the natural history of individuals with a CF40mut/(TG)m-5T genotype.

Indexed as

Dinucleotide RepeatsAllelesCaliforniaChild, PreschoolCohort StudiesCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansInfantInfant, NewbornMaleMutationPhenotypeCFTR protein, humanCystic Fibrosis Transmembrane Conductance Regulator

Identifiers

PMID27447098
PMCPMC5395019
OpenAlexW2501815423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.