Evidence map›Paper›PMID 27447090›Full record

ArticleNature communications2016

Magneto-nanosensor platform for probing low-affinity protein-protein interactions and identification of a low-affinity PD-L1/PD-L2 interaction.

Jung-Rok Lee, Daniel J B Bechstein, Chin Chun Ooi, Ashka Patel, Richard S Gaster, Elaine Ng, Lino C Gonzalez, Shan X Wang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

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  12. A membrane protein display platform for receptor interactome discovery.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jung-Rok LeeDepartment of Mechanical Engineering, Stanford University, Stanford, California 94305, USA.
Daniel J B BechsteinDepartment of Mechanical Engineering, Stanford University, Stanford, California 94305, USA.
Chin Chun OoiDepartment of Chemical Engineering, Stanford University, Stanford, California 94305, USA.
Ashka PatelDepartment of Proteomics and Biological Resources, Genentech, South San Francisco, California 94080, USA.
Richard S GasterDepartment of Bioengineering, Stanford University, Stanford, California 94305, USA.
Elaine NgDepartment of Bioengineering, Stanford University, Stanford, California 94305, USA.
Lino C GonzalezDepartment of Proteomics and Biological Resources, Genentech, South San Francisco, California 94080, USA.
Shan X WangDepartment of Materials Science and Engineering, Stanford University, Stanford, California 94305, USA.
Stanford University · USBoston University · US

Funding

TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GROSS, MITCHELL E · 2009 to 2013
$15.2M
Pilot ProjectsU54CA151459 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2010 to 2014
$12.6M
Nano Characterization and Nano Fabrication CoreU54CA199075 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2015 to 2019
$9.6M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH · 2014 to 2018
$3.6M
NCI NIH HHS U54 CA143907NCI NIH HHS U54 CA151459NCI NIH HHS U54 CA199075NIAID NIH HHS U19 AI110491
6 · The paper itself

Abstract

Substantial efforts have been made to understand the interactions between immune checkpoint receptors and their ligands targeted in immunotherapies against cancer. To carefully characterize the complete network of interactions involved and the binding affinities between their extracellular domains, an improved kinetic assay is needed to overcome limitations with surface plasmon resonance (SPR). Here, we present a magneto-nanosensor platform integrated with a microfluidic chip that allows measurement of dissociation constants in the micromolar-range. High-density conjugation of magnetic nanoparticles with prey proteins allows multivalent receptor interactions with sensor-immobilized bait proteins, more closely mimicking natural-receptor clustering on cells. The platform has advantages over traditional SPR in terms of insensitivity of signal responses to pH and salinity, less consumption of proteins and better sensitivities. Using this platform, we characterized the binding affinities of the PD-1-PD-L1/PD-L2 co-inhibitory receptor system, and discovered an unexpected interaction between the two known PD-1 ligands, PD-L1 and PD-L2.

Indexed as

Protein Interaction MappingB7-H1 AntigenComputer SystemsHumansHydrogen-Ion ConcentrationKineticsMagneticsNanoparticlesProgrammed Cell Death 1 Ligand 2 ProteinProtein BindingSalinityB7-H1 AntigenCD274 protein, humanPDCD1LG2 protein, humanProgrammed Cell Death 1 Ligand 2 Protein

Identifiers

PMID27447090
PMCPMC4961847
OpenAlexW2486262901

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.