ArticleFrontiers in plant science2016
Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.
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147 citing papers in PubMed.
- A haplotype-resolved, chromosome-scale genome assembly for the southern live oak, Quercus virginiana.G3 (Bethesda, Md.) · 2026Article
- Structural Characteristics, Comparative Analyses, and Conservation Significance of the Complete Chloroplast Genome of the Critically EndangeredEcology and evolution · 2026Article
- Comparative chloroplast genome analysis of fourFrontiers in plant science · 2026Article
- Comparative and phylogenetic analyses based on the complete chloroplast genomes of Limonium (Plumbaginaceae) species.BMC plant biology · 2025Article
- Uncovering the genetic basis for enhanced mushroom flavor inHorticulture research · 2025Article
- Inverted repeats dynamics shape Asclepiadoideae (Apocynaceae) Chloroplast genomes: effects on genome size, gene content, structural arrangement, and mutation rate.BMC genomics · 2025Article
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- The complete chloroplast genomes of four Aspidopterys species and a comparison with other Malpighiaceae species.Scientific reports · 2025Article
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- An integrative framework reveals widespread gene flow during the early radiation of oaks and relatives in Quercoideae (Fagaceae).Journal of integrative plant biology · 2025Article
- Chloroplast genomic characterization and phylogenetic analysis of elevenFrontiers in plant science · 2025Article
- Comparative analysis of the complete chloroplast genome of Pueraria provides insights for species identification, phylogenetic relationships, and taxonomy.BMC plant biology · 2024Article
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- Phylogenomics and plastome evolution of Lithospermeae (Boraginaceae).BMC plant biology · 2024Article
- The adaptive evolution of Quercus section Ilex using the chloroplast genomes of two threatened species.Scientific reports · 2024Article
- New insights on the phylogeny, evolutionary history, and ecological adaptation mechanism in cycle-cup oaks based on chloroplast genomes.Ecology and evolution · 2024Article
- Comparative analysis of whole chloroplast genomes of three common species of Nekemias from vine tea.Scientific reports · 2024Article
- Complete Chloroplast Genome ofGenes · 2024Article
- Characterization, comparison, and phylogenetic analyses of chloroplast genomes of Euphorbia species.Scientific reports · 2024Article
- An updated phylogeny and adaptive evolution within AmaranthaceaeEcology and evolution · 2024Article
87 more citing papers are in PubMed but not listed here.
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Quercus is considered economically and ecologically one of the most important genera in the Northern Hemisphere. Oaks are taxonomically perplexing because of shared interspecific morphological traits and intraspecific morphological variation, which are mainly attributed to hybridization. Universal plastid markers cannot provide a sufficient number of variable sites to explore the phylogeny of this genus, and chloroplast genome-scale data have proven to be useful in resolving intractable phylogenetic relationships. In this study, the complete chloroplast genomes of four Quercus species were sequenced, and one published chloroplast genome of Quercus baronii was retrieved for comparative analyses. The five chloroplast genomes ranged from 161,072 bp (Q. baronii) to 161,237 bp (Q. dolicholepis) in length, and their gene organization and order, and GC content, were similar to those of other Fagaceae species. We analyzed nucleotide substitutions, indels, and repeats in the chloroplast genomes, and found 19 relatively highly variable regions that will potentially provide plastid markers for further taxonomic and phylogenetic studies within Quercus. We observed that four genes (ndhA, ndhK, petA, and ycf1) were subject to positive selection. The phylogenetic relationships of the Quercus species inferred from the chloroplast genomes obtained moderate-to-high support, indicating that chloroplast genome data may be useful in resolving relationships in this genus.
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