Evidence map›Paper›PMID 27444179›Full record

ArticleAge (Dordrecht, Netherlands)2016

Loss of the antioxidant enzyme CuZnSOD (Sod1) mimics an age-related increase in absolute mitochondrial DNA copy number in the skeletal muscle.

Dustin R Masser, Nicholas W Clark, Holly Van Remmen, Willard M Freeman

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Age (Dordrecht, Netherlands), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Dustin R MasserDepartment of Physiology, The University of Oklahoma Health Sciences Center, Oklahoma City, OK, 73104, USA.
Nicholas W ClarkDepartment of Physiology, The University of Oklahoma Health Sciences Center, Oklahoma City, OK, 73104, USA.
Holly Van RemmenOklahoma Nathan Shock Center on Aging, Oklahoma City, OK, 73104, USA.
Willard M FreemanDepartment of Physiology, The University of Oklahoma Health Sciences Center, Oklahoma City, OK, 73104, USA. wfreeman@ouhsc.edu.
University of Oklahoma Health Sciences Center · USOklahoma Medical Research Foundation · US

Funding

Targeted DNA Methylation and Mitochondrial Heteroplasmy CoreP30AG050911 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Matthew John Hart · 2015 to 2026
$13.9M
INSULIN-THERAPY RESISTANT EPIGENETIC MODIFICATIONS IN DIABETIC RETINOPATHYR01EY021716 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI FREEMAN, WILLARD M · 2011 to 2014
$1.3M
Vision Science Training ProgramT32EY023202 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CALLEGAN, MICHELLE C · 2014 to 2025
$952k
Defective mitochondrial function & genomic maintenance with diabetic retinopathyR21EY024520 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI FREEMAN, WILLARD M · 2015 to 2016
$407k
Testing the mechanisms by which NMJ disruption contributes to sarcopeniaI01BX002595 · VA · SOUTH TEXAS VETERANS HEALTH CARE SYSTEM · PI VAN REMMEN, HOLLY · 2015 to 2017
–
BLRD VA I01 BX002595NEI NIH HHS R01 EY021716NEI NIH HHS R21 EY024520NEI NIH HHS T32 EY023202NIA NIH HHS P30 AG050911
6 · The paper itself

Abstract

Mitochondria contain multiple copies of the circular mitochondrial genome (mtDNA) that encodes ribosomal RNAs and proteins locally translated for oxidative phosphorylation. Loss of mtDNA integrity, both altered copy number and increased mutations, is implicated in cellular dysfunction with aging. Published data on mtDNA copy number and aging is discordant which may be due to methodological limitations for quantifying mtDNA copy number. Existing quantitative PCR (qPCR) mtDNA copy number quantification methods provide only relative abundances and are problematic to normalize to different template input amounts and across tissues/sample types. As well, existing methods cannot quantify mtDNA copy number in subcellular isolates, such as isolated mitochondria and neuronal synaptic terminals, which lack nuclear genomic DNA for normalization. We have developed and validated a novel absolute mtDNA copy number quantitation method that uses chip-based digital polymerase chain reaction (dPCR) to count the number of copies of mtDNA and used this novel method to assess the literature discrepancy in which there is no clear consensus whether mtDNA numbers change with aging in skeletal muscle. Skeletal muscle in old mice was found to have increased absolute mtDNA numbers compared to young controls. Furthermore, young Sod1

Indexed as

DNA Copy Number VariationsAgingAnimalsBrainDNA, MitochondrialFemaleHumansMaleMiceMice, Inbred C57BLMitochondriaMuscle, SkeletalPresynaptic TerminalsReal-Time Polymerase Chain ReactionSuperoxide Dismutase-1SynaptosomesDNA, MitochondrialSod1 protein, mouseSuperoxide Dismutase-1AgingDigital PCRMitochondriamtDNAmtDNA copy numberSod1Synaptosomes

Identifiers

PMID27444179
PMCPMC5061674
OpenAlexW2482076122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.