Evidence map›Paper›PMID 27443927›Full record

ArticleMethods in cell biology2016

Transcriptional regulation using the Q system in transgenic zebrafish.

A Ghosh, M E Halpern

Open access · greenAbstract read
In one paragraph

Article in Methods in cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. CRISPR/Cas9-based QF2 knock-in at theFrontiers in neuroanatomy · 2023
    Article
  9. Whole-brain imaging of freely-moving zebrafish.Frontiers in neuroscience · 2023
    Review
  10. Article
  11. The Q-system: A Versatile Repressible Binary Expression System.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Tissue self-organization underlies morphogenesis of the notochord.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A GhoshCarnegie Institution for Science, Baltimore, MD, United States.
M E HalpernCarnegie Institution for Science, Baltimore, MD, United States.
Carnegie Institution for Science · US

Funding

Transgenic Tools for Regulated Gene Expression in ZebrafishR01HD078220 · NICHD · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI HALPERN, MARNIE E · 2013 to 2017
$1.7M
NICHD NIH HHS R01 HD078220
6 · The paper itself

Abstract

Methods to label cell populations selectively or to modify their gene expression are critical tools in the study of developmental or physiological processes in vivo. A variety of approaches have been applied to the zebrafish model, capitalizing on Tol2 transposition to generate transgenic lines with high efficiency. Here we describe the adoption of the Q system of Neurospora crassa, which includes the QF transcription factor and the upstream activating sequence (QUAS) to which it binds. These components function as a bipartite regulatory system similar to that of yeast Gal4/UAS, producing robust expression in transient assays of zebrafish embryos injected with plasmids and in stable transgenic lines. An important advantage, however, is that QUAS-regulated transgenes appear far less susceptible to transcriptional silencing even after seven generations. This chapter describes some of the Q system reagents that have been developed for zebrafish, as well as the use of the QF transcription factor for isolation of tissue-specific driver lines from gene/enhancer trap screens. Additional strategies successfully implemented in invertebrate models, such as a truncated QF transcription factor (QF2) or the reassembly of a split QF, are also discussed. The provided information, and available Gateway-based vectors, should enable those working with the zebrafish model to implement the Q system with minimal effort or to use it in combination with Gal4, Cre, or other regulatory systems for further refinement of transcriptional control.

Indexed as

AnimalsAnimals, Genetically ModifiedDNA Transposable ElementsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalGreen Fluorescent ProteinsNeurospora crassaTranscriptional ActivationTranscription FactorsTransgenesZebrafishDNA Transposable ElementsGreen Fluorescent ProteinsTranscription FactorsBipartite systemGal4qalocusTranscriptional regulationTransgenesis

Identifiers

PMID27443927
PMCPMC5455989
OpenAlexW2412233601

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.