ArticlePloS one2016
Five Complete Chloroplast Genome Sequences from Diospyros: Genome Organization and Comparative Analysis.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
38 citing papers in PubMed, 72 citations in OpenAlex.
- A global phylogenetic framework for Diospyros L. (Ebenaceae, Ericales): enhanced taxon and sample coverage through NGS, Sanger sequencing and herbariomics.Annals of botany · 2026Article
- The Complete Chloroplast Genome and the Phylogenetic Analysis ofInternational journal of molecular sciences · 2025Article
- Complete chloroplast genome sequence of Pachystachys lutea Nees: genome structure, adaptive evolution, and phylogenetic relationships.BMC genomic data · 2025Article
- Article
- The Complete Chloroplast Genome and the Phylogenetic Analysis ofInternational journal of molecular sciences · 2025Article
- Responses of ThreePlants (Basel, Switzerland) · 2024Article
- Characterization and phylogenetic analysis of the chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- The complete chloroplast genome ofComparative cytogenetics · 2024Article
- Genetic insights into the dissolution of dioecy in diploid persimmon Diospyros oleifera Cheng.BMC plant biology · 2023Article
- Shoot Organogenesis and Regeneration from Leaf Seedlings ofPlants (Basel, Switzerland) · 2023Article
- Comparative analysis ofEcology and evolution · 2023Article
- Comparison of Biological and Genetic Characteristics between Two Most Common Broad-Leaved Weeds in Paddy Fields:Biology · 2023Article
- Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing.BMC genomic data · 2023Article
- Evolutionary and phylogenetic analyses of 11Frontiers in plant science · 2023Article
- Regulatory mechanism ofFrontiers in plant science · 2023Article
- Comparative Analysis of Whole Chloroplast Genomes of Three Common Species ofInternational journal of molecular sciences · 2022Article
- Characteristics and comparative analysis of Mesona chinensis Benth chloroplast genome reveals DNA barcode regions for species identification.Functional & integrative genomics · 2022Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome sequence ofHeliyon · 2022Article
- Comparative Analysis of the Complete Chloroplast Genomes of EightLife (Basel, Switzerland) · 2022Article
- Population Analysis ofInternational journal of molecular sciences · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diospyros is the largest genus in Ebenaceae, comprising more than 500 species with remarkable economic value, especially Diospyros kaki Thunb., which has traditionally been an important food resource in China, Korea, and Japan. Complete chloroplast (cp) genomes from D. kaki, D. lotus L., D. oleifera Cheng., D. glaucifolia Metc., and Diospyros 'Jinzaoshi' were sequenced using Illumina sequencing technology. This is the first cp genome reported in Ebenaceae. The cp genome sequences of Diospyros ranged from 157,300 to 157,784 bp in length, presenting a typical quadripartite structure with two inverted repeats each separated by one large and one small single-copy region. For each cp genome, 134 genes were annotated, including 80 protein-coding, 31 tRNA, and 4 rRNA unique genes. In all, 179 repeats and 283 single sequence repeats were identified. Four hypervariable regions, namely, intergenic region of trnQ_rps16, trnV_ndhC, and psbD_trnT, and intron of ndhA, were identified in the Diospyros genomes. Phylogenetic analyses based on the whole cp genome, protein-coding, and intergenic and intron sequences indicated that D. oleifera is closely related to D. kaki and could be used as a model plant for future research on D. kaki; to our knowledge, this is proposed for the first time. Further, these analyses together with two large deletions (301 and 140 bp) in the cp genome of D. 'Jinzaoshi', support its placement as a new species in Diospyros. Both maximum parsimony and likelihood analyses for 19 taxa indicated the basal position of Ericales in asterids and suggested that Ebenaceae is monophyletic in Ericales.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.