Evidence map›Paper›PMID 27441721›Full record

ArticlePloS one2016

Contrasting Potato Foliage and Tuber Defense Mechanisms against the Late Blight Pathogen Phytophthora infestans.

Liangliang Gao, James M Bradeen

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Deciphering the Molecular Interplay Between RXLR-EncodedInternational journal of molecular sciences · 2025
    Review
  2. Article
  3. PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress.Database : the journal of biological databases and curation · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Global expression patterns ofFrontiers in plant science · 2023
    Article
  8. Article
  9. Article
  10. Comparison of the Distinct, Host-Specific Response of ThreeInternational journal of molecular sciences · 2021
    Article
  11. Article
  12. Article
  13. Soybean Hypocotyls PreventFrontiers in plant science · 2021
    Article
  14. Volatile Compounds FromFrontiers in microbiology · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Liangliang GaoDepartment of Plant Pathology, University of Minnesota, St Paul, Minnesota, United States of America.ORCID http://orcid.org/0000-0002-3864-0631
James M BradeenDepartment of Plant Pathology, University of Minnesota, St Paul, Minnesota, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The late blight pathogen Phytophthora infestans can attack both potato foliage and tubers. When inoculated with P. infestans, foliage of nontransformed 'Russet Burbank' (WT) develops late blight disease while that of transgenic 'Russet Burbank' line SP2211 (+RB) does not. We compared the foliar transcriptome responses of these two lines to P. infestans inoculation using an RNA-seq approach. A total of 515 million paired end RNA-seq reads were generated, representing the transcription of 29,970 genes. We also compared the differences and similarities of defense mechanisms against P. infestans in potato foliage and tubers. Differentially expressed genes, gene groups and ontology bins were identified to show similarities and differences in foliage and tuber defense mechanisms. Our results suggest that R gene dosage and shared biochemical pathways (such as ethylene and stress bins) contribute to RB-mediated incompatible potato-P. infestans interactions in both the foliage and tubers. Certain ontology bins such as cell wall and lipid metabolisms are potentially organ-specific.

Indexed as

Host-Parasite InteractionsPhytophthora infestansCluster AnalysisComputational BiologyDisease ResistanceGene Expression ProfilingGene OntologyGenome, PlantGenotypeHigh-Throughput Nucleotide SequencingPhenotypePlant DiseasesPlant TubersSolanum tuberosumTranscriptome

Identifiers

PMID27441721
PMCPMC4956046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.