Evidence map›Paper›PMID 27441625›Full record

ArticlePloS one2016

Short Chain Fatty Acids (SCFA) Reprogram Gene Expression in Human Malignant Epithelial and Lymphoid Cells.

Lidiia Astakhova, Mtakai Ngara, Olga Babich, Aleksandr Prosekov, Lyudmila Asyakina, Lyubov Dyshlyuk, Tore Midtvedt, Xiaoying Zhou, Ingemar Ernberg, Liudmila Matskova

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  6. Positive effect ofFrontiers in microbiology · 2022
    Article
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  10. Review
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  12. Observational
  13. The gut-bone axis: how bacterial metabolites bridge the distance.The Journal of clinical investigation · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Lidiia AstakhovaInstitute of Food Science and Technology, Kemerovo, Russia.
Mtakai NgaraDepartment of Cell and Molecular Biology (CMB), Ludwig Institute for Cancer Research (LICR), Karolinska Institutet, Stockholm, Sweden.
Olga BabichInstitute of Food Science and Technology, Kemerovo, Russia.
Aleksandr ProsekovInstitute of Food Science and Technology, Kemerovo, Russia.
Lyudmila AsyakinaInstitute of Food Science and Technology, Kemerovo, Russia.
Lyubov DyshlyukInstitute of Food Science and Technology, Kemerovo, Russia.
Tore MidtvedtDepartment of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.
Xiaoying ZhouDepartment of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.
Ingemar ErnbergDepartment of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.
Liudmila MatskovaDepartment of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.
Karolinska Institutet · SEKemerovo Institute of Food Science and Technology · RULudwig Cancer Research · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effect of short chain fatty acids (SCFAs) on gene expression in human, malignant cell lines was investigated, with a focus on signaling pathways. The commensal microbial flora produce high levels of SCFAs with established physiologic effects in humans. The most abundant SCFA metabolite in the human microflora is n-butyric acid. It is well known to activate endogenous latent Epstein-Barr virus (EBV), that was used as a reference read out system and extended to EBV+ epithelial cancer cell lines. N-butyric acid and its salt induced inflammatory and apoptotic responses in tumor cells of epithelial and lymphoid origin. Epithelial cell migration was inhibited. The n-butyric gene activation was reduced by knock-down of the cell membrane transporters MCT-1 and -4 by siRNA. N-butyric acid show biologically significant effects on several important cellular functions, also with relevance for tumor cell phenotype.

Indexed as

ApoptosisButyric AcidCell Line, TumorCell MovementCell Transformation, NeoplasticEpithelial CellsFatty Acids, VolatileGene Expression Regulation, NeoplasticHerpesvirus 4, HumanHumansInflammationLymphocytesLymphoma, B-CellMembrane Transport ProteinsNF-kappa BPoly(ADP-ribose) PolymerasesButyric AcidFatty Acids, VolatileMembrane Transport ProteinsNF-kappa BPoly(ADP-ribose) Polymerases

Identifiers

PMID27441625
PMCPMC4956219
OpenAlexW2480542385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.