Evidence map›Paper›PMID 27440937›Full record

ArticleJournal of experimental botany2016

Functional characterization of the ribosome biogenesis factors PES, BOP1, and WDR12 (PeBoW), and mechanisms of defective cell growth and proliferation caused by PeBoW deficiency in Arabidopsis.

Chang Sook Ahn, Hui Kyung Cho, Du-Hwa Lee, Hee-Jung Sim, Sang-Gyu Kim, Hyun-Sook Pai

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chang Sook AhnDepartment of Systems Biology, Yonsei University, Seoul 120-749, Korea.
Hui Kyung ChoDepartment of Systems Biology, Yonsei University, Seoul 120-749, Korea.
Du-Hwa LeeDepartment of Systems Biology, Yonsei University, Seoul 120-749, Korea.
Hee-Jung SimCenter for Genome Engineering, Institute for Basic Science, Daejeon 305-811, Korea.
Sang-Gyu KimCenter for Genome Engineering, Institute for Basic Science, Daejeon 305-811, Korea.
Hyun-Sook PaiDepartment of Systems Biology, Yonsei University, Seoul 120-749, Korea hspai@yonsei.ac.kr.
Yonsei University · KRInstitute for Basic Science · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nucleolar protein pescadillo (PES) controls biogenesis of the 60S ribosomal subunit through functional interactions with Block of Proliferation 1 (BOP1) and WD Repeat Domain 12 (WDR12) in plants. In this study, we determined protein characteristics and in planta functions of BOP1 and WDR12, and characterized defects in plant cell growth and proliferation caused by a deficiency of PeBoW (PES-BOP1-WDR12) proteins. Dexamethasone-inducible RNAi of BOP1 and WDR12 caused developmental arrest and premature senescence in Arabidopsis, similar to the phenotype of PES RNAi. Both the N-terminal domain and WD40 repeats of BOP1 and WDR12 were critical for specific associations with 60S/80S ribosomes. In response to nucleolar stress or DNA damage, PeBoW proteins moved from the nucleolus to the nucleoplasm. Kinematic analyses of leaf growth revealed that depletion of PeBoW proteins led to dramatically suppressed cell proliferation, cell expansion, and epidermal pavement cell differentiation. A deficiency in PeBoW proteins resulted in reduced cyclin-dependent kinase Type A activity, causing reduced phosphorylation of histone H1 and retinoblastoma-related (RBR) protein. PeBoW silencing caused rapid transcriptional modulation of cell-cycle genes, including reduction of E2Fa and Cyclin D family genes, and induction of several KRP genes, accompanied by down-regulation of auxin-related genes and up-regulation of jasmonic acid-related genes. Taken together, these results suggest that the PeBoW proteins involved in ribosome biogenesis play a critical role in plant cell growth and survival, and their depletion leads to inhibition of cell-cycle progression, possibly modulated by phytohormone signaling.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsCarrier ProteinsCell ProliferationCyclin-Dependent KinasesCyclopentanesImmunoblottingOxylipinsPlant Growth RegulatorsPlant LeavesReal-Time Polymerase Chain ReactionRibosomesRibosome Subunits, Large, EukaryoticAbscisic AcidArabidopsis ProteinsBOP1 protein, ArabidopsisCarrier ProteinsCyclin-Dependent KinasesCyclopentanesjasmonic acidOxylipinsPlant Growth RegulatorsWDR12 protein, ArabidopsisCell cycle genesgrowth defectskinematic analysisnucleolar stressphytohormonesribosome biogenesis.

Identifiers

PMID27440937
PMCPMC5014167
OpenAlexW2506273548

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.