Evidence map›Paper›PMID 27440183›Full record

ArticleJournal of digital imaging2016

Cloud-Based NoSQL Open Database of Pulmonary Nodules for Computer-Aided Lung Cancer Diagnosis and Reproducible Research.

José Raniery Ferreira Junior, Marcelo Costa Oliveira, Paulo Mazzoncini de Azevedo-Marques

Abstract read
In one paragraph

Article in Journal of digital imaging, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Selecting relevant 3D image features of margin sharpness and texture for lung nodule retrieval.International journal of computer assisted radiology and surgery · 2017
    Article
  7. Automatic weighing attribute to retrieve similar lung cancer nodules.BMC medical informatics and decision making · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

José Raniery Ferreira JuniorLab of Telemedicine and Medical Informatics, University Hospital Prof. Alberto Antunes, Institute of Computing, Federal University of Alagoas, Av. Lourival Melo Mota, Cidade Universitária, 57072-900, Maceió, Alagoas, Brazil. jrfj@ic.ufal.br.
Marcelo Costa OliveiraLab of Telemedicine and Medical Informatics, University Hospital Prof. Alberto Antunes, Institute of Computing, Federal University of Alagoas, Av. Lourival Melo Mota, Cidade Universitária, 57072-900, Maceió, Alagoas, Brazil.
Paulo Mazzoncini de Azevedo-MarquesCenter of Imaging Sciences and Medical Physics, Internal Medicine Department, Ribeirão Preto Medical School, University of São Paulo, Av. dos Bandeirantes, Monte Alegre, Ribeirão Preto, São Paulo, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung cancer is the leading cause of cancer-related deaths in the world, and its main manifestation is pulmonary nodules. Detection and classification of pulmonary nodules are challenging tasks that must be done by qualified specialists, but image interpretation errors make those tasks difficult. In order to aid radiologists on those hard tasks, it is important to integrate the computer-based tools with the lesion detection, pathology diagnosis, and image interpretation processes. However, computer-aided diagnosis research faces the problem of not having enough shared medical reference data for the development, testing, and evaluation of computational methods for diagnosis. In order to minimize this problem, this paper presents a public nonrelational document-oriented cloud-based database of pulmonary nodules characterized by 3D texture attributes, identified by experienced radiologists and classified in nine different subjective characteristics by the same specialists. Our goal with the development of this database is to improve computer-aided lung cancer diagnosis and pulmonary nodule detection and classification research through the deployment of this database in a cloud Database as a Service framework. Pulmonary nodule data was provided by the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI), image descriptors were acquired by a volumetric texture analysis, and database schema was developed using a document-oriented Not only Structured Query Language (NoSQL) approach. The proposed database is now with 379 exams, 838 nodules, and 8237 images, 4029 of them are CT scans and 4208 manually segmented nodules, and it is allocated in a MongoDB instance on a cloud infrastructure.

Indexed as

Cloud ComputingDatabases, FactualDiagnosis, Computer-AssistedHumansLung NeoplasmsRadiographic Image Interpretation, Computer-AssistedReproducibility of ResultsSolitary Pulmonary NoduleTomography, X-Ray Computed3D texture analysisCloud computingComputer-aided detectionComputer-aided diagnosisDatabase as a ServiceDocument-oriented nonrelational databaseImage Database Resource InitiativeLung cancerLung Image Database ConsortiumMongoDBNoSQLPulmonary noduleReproducible research

Identifiers

PMID27440183
PMCPMC5114234

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.