Evidence map›Paper›PMID 27440043›Full record

ArticleThe Journal of biological chemistry2016

Genetically Programmed Changes in Photosynthetic Cofactor Metabolism in Copper-deficient Chlamydomonas.

Daniela Strenkert, Clariss Ann Limso, Abdelhak Fatihi, Stefan Schmollinger, Gilles J Basset, Sabeeha S Merchant

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Single-cell visualization and quantification of trace metals inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  2. Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. From economy to luxury: Copper homeostasis in Chlamydomonas and other algae.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  4. Manganese co-localizes with calcium and phosphorus inThe Journal of biological chemistry · 2019
    Article
  5. Multiomics resolution of molecular events during a day in the life of Chlamydomonas.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Regulating cellular trace metal economy in algae.Current opinion in plant biology · 2017
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Daniela StrenkertFrom the Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095, the Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095.
Clariss Ann Limsothe Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095.
Abdelhak Fatihithe Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech, 78026 Versailles Cedex, France, and.
Stefan SchmollingerFrom the Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095, the Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095.
Gilles J Bassetthe Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611.
Sabeeha S MerchantFrom the Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095, the Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095, merchant@chem.ucla.edu.
University of California, Los Angeles · USAgroParisTech · FRU.S. Horticultural Research Laboratory · US

Funding

Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Nutritional Copper Signaling and HomeostasisR37GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2020
$4.3M
NIGMS NIH HHS R01 GM042143NIGMS NIH HHS R37 GM042143
6 · The paper itself

Abstract

Genetic and genomic studies indicate that copper deficiency triggers changes in the expression of genes encoding key enzymes in various chloroplast-localized lipid/pigment biosynthetic pathways. Among these are CGL78 involved in chlorophyll biosynthesis and HPPD1, encoding 4-hydroxyphenylpyruvate dioxygenase catalyzing the committed step of plastoquinone and tocopherol biosyntheses. Copper deficiency in wild-type cells does not change the chlorophyll content, but a survey of chlorophyll protein accumulation in this situation revealed increased accumulation of LHCSR3, which is blocked at the level of mRNA accumulation when either CGL78 expression is reduced or in the crd1 mutant, which has a copper-nutrition conditional defect at the same step in chlorophyll biosynthesis. Again, like copper-deficient crd1 strains, cgl78 knock-down lines also have reduced chlorophyll content concomitant with loss of PSI-LHCI super-complexes and reduced abundance of a chlorophyll binding subunit of PSI, PSAK, which connects LHCI to PSI. For HPPD1, increased mRNA results in increased abundance of the corresponding protein in copper-deficient cells concomitant with CRR1-dependent increased accumulation of γ-tocopherols, but not plastoquinone-9 nor total tocopherols. In crr1 mutants, where increased HPPD1 expression is blocked, plastochromanol-8, derived from plastoquinone-9 and purported to also have an antioxidant function, is found instead. Although not previously found in algae, this metabolite may occur only in stress conditions.

Indexed as

Chlamydomonas reinhardtiiChlorophyllChromansCopperGene Expression Regulation, PlantPhotosynthesisPlant ProteinsPlastoquinoneRNA, MessengerVitamin EChlorophyllChromansCopperPlant Proteinsplastochromanol 8PlastoquinoneRNA, MessengerVitamin EantioxidantChlamydomonaschlorophyllLCAAlight-harvesting complex (antenna complex)metal homeostasisSBP domainYcf54

Identifiers

PMID27440043
PMCPMC5009281
OpenAlexW2484154571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.