Evidence map›Paper›PMID 27439869›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Conformational selectivity in cytochrome P450 redox partner interactions.

Scott A Hollingsworth, Dipanwita Batabyal, Brian D Nguyen, Thomas L Poulos

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 59 citations in OpenAlex.

  1. Characterization of a CYP107 family vitamin DArchives of biochemistry and biophysics · 2026
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  11. Molecular and Structural Evolution of Cytochrome P450 Aromatase.International journal of molecular sciences · 2021
    Article
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  14. Conformational turn triggers regio-selectivity in the bioactivation of thiophene-contained compounds mediated by cytochrome P450.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Scott A HollingsworthDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697.
Dipanwita BatabyalDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697.
Brian D NguyenDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697.
Thomas L PoulosDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697 poulos@uci.edu.
University of California, Irvine · US

Funding

CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
STRUCTURAL STUDIES ON NITRIC OXIDE SYNTHASER01GM057353 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L · 1998 to 2018
$6.8M
Training Program in Chemical and Structural BiologyT32GM108561 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L, TOBIAS, DOUGLAS J · 2014 to 2018
$860k
NCI NIH HHS T32 CA009054NIGMS NIH HHS R01 GM057353NIGMS NIH HHS T32 GM108561
6 · The paper itself

Abstract

The heme iron of cytochromes P450 must be reduced to bind and activate molecular oxygen for substrate oxidation. Reducing equivalents are derived from a redox partner, which requires the formation of a protein-protein complex. A subject of increasing discussion is the role that redox partner binding plays, if any, in favoring significant structural changes in the P450s that are required for activity. Many P450s now have been shown to experience large open and closed motions. Several structural and spectral studies indicate that the well-studied P450cam adopts the open conformation when its redox partner, putidaredoxin (Pdx), binds, whereas recent NMR studies indicate that this view is incorrect. Given the relevance of this discrepancy to P450 chemistry, it is important to determine whether Pdx favors the open or closed form of P450cam. Here, we have used both computational and experimental isothermal titration calorimetry studies that unequivocally show Pdx favors binding to the open form of P450cam. Analyses of molecular-dynamic trajectories also provide insights into intermediate conformational states that could be relevant to catalysis.

Indexed as

Molecular Dynamics SimulationProtein ConformationBacterial ProteinsCalorimetryCamphor 5-MonooxygenaseCytochrome P-450 Enzyme SystemFerredoxinsNuclear Magnetic Resonance, BiomolecularOxidation-ReductionProtein BindingPseudomonas putidaThermodynamicsBacterial ProteinsCamphor 5-MonooxygenaseCytochrome P-450 Enzyme SystemFerredoxinsputidaredoxinconformationP450redox partner

Identifiers

PMID27439869
PMCPMC4978276
OpenAlexW2487963540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.