Evidence map›Paper›PMID 27439028›Full record

ArticleBiochemistry2016

The Structure of Carbonic Anhydrase IX Is Adapted for Low-pH Catalysis.

Brian P Mahon, Avni Bhatt, Lilien Socorro, Jenna M Driscoll, Cynthia Okoh, Carrie L Lomelino, Mam Y Mboge, Justin J Kurian, Chingkuang Tu, Mavis Agbandje-McKenna and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 62 citations in OpenAlex.

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  15. Article
  16. Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX.International journal of molecular sciences · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Brian P MahonDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Avni BhattDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Lilien SocorroDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Jenna M DriscollDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Cynthia OkohDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Carrie L LomelinoDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Mam Y MbogeDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Justin J KurianDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Chingkuang TuDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Mavis Agbandje-McKennaDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Susan C FrostDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
Robert McKennaDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine , Gainesville, Florida 32610, United States.
University of Florida · USFlorida College · US

Funding

CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
Carbonic anhydrase and pH control in breast cancer cellsR01CA165284 · NCI · UNIVERSITY OF FLORIDA · PI FROST, SUSAN COOKE · 2013 to 2017
$1.7M
NCI NIH HHS R01 CA165284NIAID NIH HHS T32 AI007110NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

Human carbonic anhydrase IX (hCA IX) expression in many cancers is associated with hypoxic tumors and poor patient outcome. Inhibitors of hCA IX have been used as anticancer agents with some entering Phase I clinical trials. hCA IX is transmembrane protein whose catalytic domain faces the extracellular tumor milieu, which is typically associated with an acidic microenvironment. Here, we show that the catalytic domain of hCA IX (hCA IX-c) exhibits the necessary biochemical and biophysical properties that allow for low pH stability and activity. Furthermore, the unfolding process of hCA IX-c appears to be reversible, and its catalytic efficiency is thought to be correlated directly with its stability between pH 3.0 and 8.0 but not above pH 8.0. To rationalize this, we determined the X-ray crystal structure of hCA IX-c to 1.6 Å resolution. Insights from this study suggest an understanding of hCA IX-c stability and activity in low-pH tumor microenvironments and may be applicable to determining pH-related effects on enzymes.

Indexed as

Hydrogen-Ion ConcentrationCarbonic Anhydrase IXCatalysisCircular DichroismCrystallography, X-RayEnzyme StabilityMass SpectrometryRecombinant ProteinsCarbonic Anhydrase IXRecombinant Proteins

Identifiers

PMID27439028
PMCPMC5322481
OpenAlexW2496093563

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.