Evidence map›Paper›PMID 27438142›Full record

ArticleOncotarget2016

Association of multiparametric MRI quantitative imaging features with prostate cancer gene expression in MRI-targeted prostate biopsies.

Radka Stoyanova, Alan Pollack, Mandeep Takhar, Charles Lynne, Nestor Parra, Lucia L C Lam, Mohammed Alshalalfa, Christine Buerki, Rosa Castillo, Merce Jorda and 9 more

Abstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Prostate Cancer Radiogenomics-From Imaging to Molecular Characterization.International journal of molecular sciences · 2021
    Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Radka StoyanovaDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA.
Alan PollackDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA.
Mandeep TakharReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Charles LynneDepartment of Urology, University of Miami Miller School of Medicine, Miami, FL, USA.
Nestor ParraDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA.
Lucia L C LamReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Mohammed AlshalalfaReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Christine BuerkiReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Rosa CastilloDepartment of Radiology, University of Miami Miller School of Medicine, Miami, FL, USA.
Merce JordaDepartment of Urology, University of Miami Miller School of Medicine, Miami, FL, USA.
Hussam Al-Deen AshabReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Oleksandr N KryvenkoDepartment of Urology, University of Miami Miller School of Medicine, Miami, FL, USA.
Sanoj PunnenDepartment of Urology, University of Miami Miller School of Medicine, Miami, FL, USA.
Dipen J ParekhDepartment of Urology, University of Miami Miller School of Medicine, Miami, FL, USA.
Matthew C AbramowitzDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA.
Robert J GilliesCancer Imaging and Metabolism, Moffitt Cancer Center, Tampa, FL, USA.
Elai DavicioniReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Nicholas ErhoReserach and Development, GenomeDx Biosciences, Vancouver, BC, Canada.
Adrian IshkanianDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, FL, USA.

Funding

MRI Imaging and Genetic Signatures to Manage Prostate Cancer OverdiagnosisR01CA189295 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI POLLACK, ALAN · 2014 to 2018
$3.2M
(PQC4) Habitats in Prostate CancerR01CA190105 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI BALAGURUNATHAN, YOGANAND, GILLIES, ROBERT J. · 2014 to 2017
$2.8M
NCI NIH HHS R01 CA189295NCI NIH HHS R01 CA190105
6 · The paper itself

Abstract

Standard clinicopathological variables are inadequate for optimal management of prostate cancer patients. While genomic classifiers have improved patient risk classification, the multifocality and heterogeneity of prostate cancer can confound pre-treatment assessment. The objective was to investigate the association of multiparametric (mp)MRI quantitative features with prostate cancer risk gene expression profiles in mpMRI-guided biopsies tissues.Global gene expression profiles were generated from 17 mpMRI-directed diagnostic prostate biopsies using an Affimetrix platform. Spatially distinct imaging areas ('habitats') were identified on MRI/3D-Ultrasound fusion. Radiomic features were extracted from biopsy regions and normal appearing tissues. We correlated 49 radiomic features with three clinically available gene signatures associated with adverse outcome. The signatures contain genes that are over-expressed in aggressive prostate cancers and genes that are under-expressed in aggressive prostate cancers. There were significant correlations between these genes and quantitative imaging features, indicating the presence of prostate cancer prognostic signal in the radiomic features. Strong associations were also found between the radiomic features and significantly expressed genes. Gene ontology analysis identified specific radiomic features associated with immune/inflammatory response, metabolism, cell and biological adhesion. To our knowledge, this is the first study to correlate radiogenomic parameters with prostate cancer in men with MRI-guided biopsy.

Indexed as

Gene Expression Regulation, NeoplasticAgedAged, 80 and overCluster AnalysisGene Expression ProfilingGene OntologyHumansImage-Guided BiopsyMagnetic Resonance ImagingMaleMiddle AgedProstateProstatic NeoplasmsRetrospective Studiesgene expressionMRI-targeted biopsiesmultiparametric MRIprostate cancerradiogenomics

Identifiers

PMID27438142
PMCPMC5288193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.