Evidence map›Paper›PMID 27438134›Full record

ArticlePlant cell reports2016

Identification of loci associated with embryo yield in microspore culture of Brassica rapa by segregation distortion analysis.

Hiroyasu Kitashiba, Kumiko Taguchi, Ikuyo Kaneko, Kiyofumi Inaba, Shuji Yokoi, Yoshihito Takahata, Takeshi Nishio

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hiroyasu KitashibaGraduate School of Agricultural Science, Tohoku University, 1-1, Tsutsumidori-Amamiyamachi, Sendai, Miyagi, 981-8555, Japan. hkitashiba@m.tohoku.ac.jp.
Kumiko TaguchiGraduate School of Agricultural Science, Tohoku University, 1-1, Tsutsumidori-Amamiyamachi, Sendai, Miyagi, 981-8555, Japan.
Ikuyo KanekoGraduate School of Agricultural Science, Tohoku University, 1-1, Tsutsumidori-Amamiyamachi, Sendai, Miyagi, 981-8555, Japan.
Kiyofumi InabaGraduate School of Agricultural Science, Tohoku University, 1-1, Tsutsumidori-Amamiyamachi, Sendai, Miyagi, 981-8555, Japan.
Shuji YokoiFaculty of Agriculture, Iwate University, Morioka, Japan.
Yoshihito TakahataFaculty of Agriculture, Iwate University, Morioka, Japan.
Takeshi NishioGraduate School of Agricultural Science, Tohoku University, 1-1, Tsutsumidori-Amamiyamachi, Sendai, Miyagi, 981-8555, Japan.
Tohoku University · JPIwate University · JPOsaka Prefecture University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageWe identified three physical positions associated with embryo yield in microspore culture of Brassica rapa by segregation distortion analysis. We also confirmed their genetic effects on the embryo yield. Isolated microspore culture is well utilized for the production of haploid or doubled-haploid plants in Brassica crops. Brassica rapa cv. 'Ho Mei' is one of the most excellent cultivars in embryo yield of microspore culture. To identify the loci associated with microspore embryogenesis, segregation analysis of 154 DNA markers anchored to B. rapa chromosomes (A01-A10) was performed using a population of microspore-derived embryos obtained from an F1 hybrid between 'CR-Seiga', a low yield cultivar in microspore-derived embryos, and 'Ho Mei'. Three regions showing significant segregation distortion with increasing 'Ho Mei' alleles were detected on A05, A08 and A09, although these regions showed the expected Mendelian segregation ratio in an F2 population. The additive effect of alleles in these regions on embryo yield was confirmed in a BC3F1 population. One region on A08 containing Br071-5c had a higher effect than the other regions. Polymorphism of nucleotide sequences around the Br071-5c locus was investigated to find the gene possibly responsible for efficient embryogenesis from microspores.

Indexed as

Genetic LociAllelesBrassica rapaChromosome SegregationChromosomes, PlantCrosses, GeneticGenetic MarkersPollenSeedsGenetic MarkersBrassica rapaMicrospore cultureMicrospore-derived embryoSegregation distortion

Identifiers

PMID27438134
OpenAlexW2484868086

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.