Evidence map›Paper›PMID 27437114›Full record

ArticleIUCrJ2016

Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal.

Sam Horrell, Svetlana V Antonyuk, Robert R Eady, S Samar Hasnain, Michael A Hough, Richard W Strange

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identifying and avoiding radiation damage in macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2024
    Article
  5. Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Review
  7. Review
  8. Homogeneous batch micro-crystallization of proteins from ammonium sulfate.Acta crystallographica. Section D, Structural biology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. High-resolution neutron crystallography visualizes an OH-bound resting state of a copper-containing nitrite reductase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Data-driven challenges and opportunities in crystallography.Emerging topics in life sciences · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Synchrotron science in the UK: NINA, the SRS and Diamond.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sam HorrellSchool of Biological Sciences, University of Essex , Wivenhoe Park, Colchester CO4 3SQ, England.
Svetlana V AntonyukMolecular Biophysics Group, Institute of Integrative Biology, University of Liverpool , Life Sciences Building, Liverpool L69 7ZB, England.
Robert R EadyMolecular Biophysics Group, Institute of Integrative Biology, University of Liverpool , Life Sciences Building, Liverpool L69 7ZB, England.
S Samar HasnainMolecular Biophysics Group, Institute of Integrative Biology, University of Liverpool , Life Sciences Building, Liverpool L69 7ZB, England.
Michael A HoughSchool of Biological Sciences, University of Essex , Wivenhoe Park, Colchester CO4 3SQ, England.
Richard W StrangeSchool of Biological Sciences, University of Essex , Wivenhoe Park, Colchester CO4 3SQ, England.
University of Essex · GBUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Relating individual protein crystal structures to an enzyme mechanism remains a major and challenging goal for structural biology. Serial crystallography using multiple crystals has recently been reported in both synchrotron-radiation and X-ray free-electron laser experiments. In this work, serial crystallography was used to obtain multiple structures serially from one crystal (MSOX) to study in crystallo enzyme catalysis. Rapid, shutterless X-ray detector technology on a synchrotron MX beamline was exploited to perform low-dose serial crystallography on a single copper nitrite reductase crystal, which survived long enough for 45 consecutive 100 K X-ray structures to be collected at 1.07-1.62 Å resolution, all sampled from the same crystal volume. This serial crystallography approach revealed the gradual conversion of the substrate bound at the catalytic type 2 Cu centre from nitrite to nitric oxide, following reduction of the type 1 Cu electron-transfer centre by X-ray-generated solvated electrons. Significant, well defined structural rearrangements in the active site are evident in the series as the enzyme moves through its catalytic cycle, namely nitrite reduction, which is a vital step in the global denitrification process. It is proposed that such a serial crystallography approach is widely applicable for studying any redox or electron-driven enzyme reactions from a single protein crystal. It can provide a 'catalytic reaction movie' highlighting the structural changes that occur during enzyme catalysis. The anticipated developments in the automation of data analysis and modelling are likely to allow seamless and near-real-time analysis of such data on-site at some of the powerful synchrotron crystallographic beamlines.

Indexed as

catalysiscopper nitrite reductasedenitrificationenzyme mechanismMSOXradiation damageradiolysisserial crystallographysynchrotron radiationXFEL

Identifiers

PMID27437114
PMCPMC4937782
OpenAlexW2439017682

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.