Evidence map›Paper›PMID 27436286›Full record

ReviewNucleic acids research2016

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

John F Atkins, Gary Loughran, Pramod R Bhatt, Andrew E Firth, Pavel V Baranov

Open access · goldAbstract readReview
In one paragraph

Review in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 234 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
234citing papers in PubMed, 1 pooled it
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

234 citing papers in PubMed, 1 synthesis or guideline pooled it, 365 citations in OpenAlex.

  1. Current Practice in Bicistronic IRES Reporter Use: A Systematic Review.International journal of molecular sciences · 2021
    Pooled it
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174 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

John F AtkinsSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland School of Microbiology, University College Cork, Cork, Ireland Department of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA j.atkins@ucc.ie.
Gary LoughranSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Pramod R BhattSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Andrew E FirthDivision of Virology, Department of Pathology, University of Cambridge, Hills Road, Cambridge CB2 0QQ, UK.
Pavel V BaranovSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
University College Cork · IE

Funding

High Throughput Screening for Foot and Mouth Disease Virus AntiviralsR03MH098688 · NIMH · UNIVERSITY OF UTAH · PI ATKINS, JOHN F. · 2012 to 2013
$74k
NIMH NIH HHS R03 MH098688Wellcome Trust 094423Wellcome Trust 106207
6 · The paper itself

Abstract

Genetic decoding is not 'frozen' as was earlier thought, but dynamic. One facet of this is frameshifting that often results in synthesis of a C-terminal region encoded by a new frame. Ribosomal frameshifting is utilized for the synthesis of additional products, for regulatory purposes and for translational 'correction' of problem or 'savior' indels. Utilization for synthesis of additional products occurs prominently in the decoding of mobile chromosomal element and viral genomes. One class of regulatory frameshifting of stable chromosomal genes governs cellular polyamine levels from yeasts to humans. In many cases of productively utilized frameshifting, the proportion of ribosomes that frameshift at a shift-prone site is enhanced by specific nascent peptide or mRNA context features. Such mRNA signals, which can be 5' or 3' of the shift site or both, can act by pairing with ribosomal RNA or as stem loops or pseudoknots even with one component being 4 kb 3' from the shift site. Transcriptional realignment at slippage-prone sequences also generates productively utilized products encoded trans-frame with respect to the genomic sequence. This too can be enhanced by nucleic acid structure. Together with dynamic codon redefinition, frameshifting is one of the forms of recoding that enriches gene expression.

Indexed as

AnimalsCarbon CycleChromosomesCodonDNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesFrameshifting, RibosomalHumansMitochondriaNucleic Acid ConformationOpen Reading FramesPolyaminesRetroelementsRNA-Directed DNA PolymeraseRNA, MessengerRNA, RibosomalCodonDNA-Directed DNA PolymeraseDNA-Directed RNA PolymerasesPolyaminesRetroelementsRNA-Directed DNA PolymeraseRNA, MessengerRNA, RibosomalTelomerase

Identifiers

PMID27436286
PMCPMC5009743
OpenAlexW2493667413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.