Evidence map›Paper›PMID 27436280›Full record

ArticleJournal of experimental botany2016

Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence.

Michael W Christiansen, Colette Matthewman, Dagmara Podzimska-Sroka, Charlotte O'Shea, Søren Lindemose, Niels Erik Møllegaard, Inger B Holme, Kim Hebelstrup, Karen Skriver, Per L Gregersen

Open access · goldAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Wheat NAC transcription factorPlant direct · 2024
    Article
  3. International journal of molecular sciences · 2022
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Major genes determining yield-related traits in wheat and barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Michael W ChristiansenDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark.
Colette MatthewmanDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark.
Dagmara Podzimska-SrokaDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark.
Charlotte O'SheaDepartment of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-Copenhagen N, Denmark.
Søren LindemoseDepartment of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-Copenhagen N, Denmark.
Niels Erik MøllegaardDepartment of Cellular and Molecular Medicin, University of Copenhagen, Blegdamsvej 3B, DK-Copenhagen N, Denmark.
Inger B HolmeDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark.
Kim HebelstrupDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark.
Karen SkriverDepartment of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-Copenhagen N, Denmark.
Per L GregersenDepartment of Genetics and Biotechnology, Aarhus University, Forsøgsvej 1, Slagelse DK-4200, Denmark per.gregersen@mbg.au.dk.
Aarhus University · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant-specific NAC transcription factors have attracted particular attention because of their involvement in stress responses, senescence, and nutrient remobilization. The HvNAC005 gene of barley encodes a protein belonging to subgroup NAC-a6 of the NAC family. This study shows that HvNAC005 is associated with developmental senescence. It was significantly up-regulated following ABA treatment, supported by ABA-responsive elements in its promoter, but it was not up-regulated during dark-induced senescence. The C-termini of proteins closely related to HvNAC005 showed overall high divergence but also contained conserved short motifs. A serine- and leucine-containing central motif was essential for transcriptional activity of the HvNAC005 C-terminus in yeast. Over-expression of HvNAC005 in barley resulted in a strong phenotype with delayed development combined with precocious senescence. The over-expressing plants showed up-regulation of genes involved with secondary metabolism, hormone metabolism, stress, signalling, development, and transport. Up-regulation of senescence markers and hormone metabolism and signalling genes supports a role of HvNAC005 in the cross field of different hormone and signalling pathways. Binding of HvNAC005 to promoter sequences of putative target genes containing the T[G/A]CGT core motif was shown by direct protein-DNA interactions of HvNAC005 with promoters for two of the up-regulated genes. In conclusion, HvNAC005 was shown to be a strong positive regulator of senescence and so is an obvious target for the fine-tuning of gene expression in future attempts to improve nutrient remobilization related to the senescence process in barley.

Indexed as

AgingCloning, MolecularElectrophoretic Mobility Shift AssayHordeumPlant ProteinsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionSaccharomyces cerevisiaeTranscription FactorsTranscriptomePlant ProteinsTranscription FactorsBarleygene regulationHordeum vulgare L.NAC transcription factorssenescencesenescence-associated genestransgenic plants.

Identifiers

PMID27436280
PMCPMC5014165
OpenAlexW2485640850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.