Evidence map›Paper›PMID 27435463›Full record

ArticlemBio2016

Promiscuous Diffusible Signal Factor Production and Responsiveness of the Xylella fastidiosa Rpf System.

Michael Ionescu, Kenji Yokota, Elena Antonova, Angelica Garcia, Ellen Beaulieu, Terry Hayes, Anthony T Iavarone, Steven E Lindow

Open access · goldAbstract read
In one paragraph

Article in mBio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
13.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

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  11. The Exometabolome ofMetabolites · 2024
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  15. Microorganisms · 2021
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  16. Review
  17. Article
  18. Article
  19. Lipid Profile ofFrontiers in microbiology · 2018
    Article
  20. A proposed role for diffusible signal factors in the biofilm formation and morphological transformation of Helicobacter pylori.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Michael IonescuDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Kenji YokotaDepartment of Applied Biology and Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Elena AntonovaDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Angelica GarciaDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Ellen BeaulieuBiosciences Division, SRI International, Menlo Park, California, USA.
Terry HayesBiosciences Division, SRI International, Menlo Park, California, USA.
Anthony T IavaroneCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, California, USA.
Steven E LindowDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA icelab@berkeley.edu.
University of California, Berkeley · USSRI International · USTokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledCell density-dependent regulation of gene expression in Xylella fastidiosa that is crucial to its switching between plant hosts and insect vectors is dependent on RpfF and its production of 2-enoic acids known as diffusible signal factor (DSF). We show that X. fastidiosa produces a particularly large variety of similar, relatively long-chain-length 2-enoic acids that are active in modulating gene expression. Both X. fastidiosa itself and a Pantoea agglomerans surrogate host harboring X. fastidiosa RpfF (XfRpfF) is capable of producing a variety of both saturated and unsaturated free fatty acids. However, only 2-cis unsaturated acids were found to be biologically active in X. fastidiosa X. fastidiosa produces, and is particularly responsive to, a novel DSF species, 2-cis-hexadecanoic acid that we term XfDSF2. It is also responsive to other, even longer 2-enoic acids to which other taxa such as Xanthomonas campestris are unresponsive. The 2-enoic acids that are produced by X. fastidiosa are strongly affected by the cellular growth environment, with XfDSF2 not detected in culture media in which 2-tetradecenoic acid (XfDSF1) had previously been found. X. fastidiosa is responsive to much lower concentrations of XfDSF2 than XfDSF1. Apparently competitive interactions can occur between various saturated and unsaturated fatty acids that block the function of those agonistic 2-enoic fatty acids. By altering the particular 2-enoic acids produced and the relative balance of free enoic and saturated fatty acids, X. fastidiosa might modulate the extent of DSF-mediated quorum sensing. IMPORTANCE: X. fastidiosa, having a complicated lifestyle in which it moves and multiplies within plants but also must be vectored by insects, utilizes DSF-based quorum sensing to partition the expression of traits needed for these two processes within different cells in this population based on local cellular density. The finding that it can produce a variety of DSF species in a strongly environmentally context-dependent manner provides insight into how it coordinates the many genes under the control of DSF signaling to successfully associate with its two hosts. Since the new DSF variant XfDSF2 described here is much more active than the previously recognized DSF species, it should contribute to plant disease control, given that the susceptibility of plants can be greatly reduced by artificially elevating the levels of DSF in plants, creating "pathogen confusion," resulting in lower virulence.

Indexed as

Quorum SensingBacterial ProteinsCytokinesFatty Acids, UnsaturatedGene Expression Regulation, BacterialXylellaBacterial ProteinsCytokinesFatty Acids, Unsaturatedresuscitation-promoting factor, bacteria

Identifiers

PMID27435463
PMCPMC4958263
OpenAlexW2484285526

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.