Evidence map›Paper›PMID 27434999›Full record

ArticleScientific reports2016

Deciphering the transcriptomic response of Fusarium verticillioides in relation to nitrogen availability and the development of sugarcane pokkah boeng disease.

Zhenyue Lin, Jihua Wang, Yixue Bao, Qiang Guo, Charles A Powell, Shiqiang Xu, Baoshan Chen, Muqing Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Redundant and Distinct Roles of Two 14-3-3 Proteins inJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Article
  6. Rhizosphere Fungal Dynamics in Sugarcane during Different Growth Stages.International journal of molecular sciences · 2023
    Article
  7. Article
  8. Predication of the Effector Proteins Secreted byJournal of fungi (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Zhenyue LinState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Jihua WangState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Yixue BaoState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Qiang GuoState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Charles A PowellIndian River Research and Education Center, IFAS, University of Florida, Fort Pierce, FL 34945, USA.
Shiqiang XuState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Baoshan ChenState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Muqing ZhangState Key Lab for Conservation and Utilization of Subtropical Agric-Biological Resources, Guangxi University, Nanning, 530005, China.
Guangxi University · CNIndian River State College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pokkah boeng, caused by Fusarium verticillioides, is a serious disease in sugarcane industry. The disease severity is related to the sugarcane genotype as well as environmental considerations, such as nitrogen application. The impact of the nitrogen source (ammonium sulfate, urea, or sodium nitrate) on sugarcane pokkah boeng disease and its pathogen was investigated in planta and fungal growth and sporulation production was measured in vitro. The results showed that ammonium and nitrate were beneficial to fungal mycelium growth, cell densities, and sporulation, which enhanced the disease symptoms of sugarcane pokkah boeng compared to urea fertilization. A total of 1,779 transcripts out of 13,999 annotated genes identified from global transcriptomic analysis were differentially expressed in F. verticillioides CNO-1 grown in the different sources of nitrogen. These were found to be involved in nitrogen metabolism, transport, and assimilation. Many of these genes were also associated with pathogenicity based on the PHI-base database. Several transcription factors were found to be associated with specific biological processes related to nitrogen utilization. Our results further demonstrated that nitrogen availability might play an important role in disease development by increasing fungal cell growth as well as influencing the expression of genes required for successful pathogenesis.

Indexed as

Gene Expression Regulation, FungalTranscriptomeCluster AnalysisFungal ProteinsFusariumGene OntologyGenes, FungalHost-Pathogen InteractionsNitrogenPlant DiseasesSaccharumSpores, FungalFungal ProteinsNitrogen

Identifiers

PMID27434999
PMCPMC4951700
OpenAlexW2478961945

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.