Evidence map›Paper›PMID 27434536›Full record

ArticlePloS one2016

Prevalence of Chlamydia trachomatis Genotypes in Men Who Have Sex with Men and Men Who Have Sex with Women Using Multilocus VNTR Analysis-ompA Typing in Guangzhou, China.

Xiaolin Qin, Heping Zheng, Yaohua Xue, Xuqi Ren, Bin Yang, Jinmei Huang, Shujie Huang, Xingzhong Wu, Weiying Zeng, Jiangli Ou and 2 more

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  5. Article
  6. High Prevalence of RectalOpen forum infectious diseases · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xiaolin QinGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Heping ZhengGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Yaohua XueGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Xuqi RenGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Bin YangGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Jinmei HuangGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Shujie HuangGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Xingzhong WuGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Weiying ZengGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Jiangli OuGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Yinyuan LanGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.
Sanmei TangGuangdong Provincial Center for Skin Diseases and STIs Control and Prevention, Guangzhou, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChlamydia trachomatis is one of the most prevalent bacterial sexually transmitted infection in China. Although C. trachomatis genotypes can be discriminated by outer membrane protein gene (ompA) sequencing, currently available methods have limited resolutions. This study used a high-resolution genotyping method, namely, multilocus variable number tandem-repeat analysis with ompA sequencing (MLVA)-ompA, to investigate the local epidemiology of C. trachomatis infections among men who have sex with men (MSM) and men who have sex with women (MSW) attending a sexually transmitted diseases (STD) clinic in Guangzhou, China.

methodsRectal specimens from MSM and urethral specimens from MSW were collected between January 2013 and July 2014 at the Guangdong Provincial Center STD clinic. The specimens were sent to the laboratory for analyses. All specimens that were tested positive for C. trachomatis by the commercial nucleic acid amplification tests were genotyped by MLVA-ompA.

resultsFifty-one rectal specimens from MSM and 96 urethral specimens from MSW were identified with C. trachomatis. One hundred and forty-four of the 147 specimens were fully genotyped by MLVA-ompA. Rectal specimens from MSM were divided into four ompA genotypes and urethral specimens from MSW into nine genotypes. No mixed infections were found among all specimens. The most frequent genotypes were D, G, J, E and F. All specimens were further divided into 46 types after ompA genotyping was combined with MLVA. Genotypes D-8.7.1 and G-3.4a.3 were the most frequent among MSM, whereas genotypes D-3.4a.4, E-8.5.1, F-8.5.1, and J-3.4a.2 were the most frequent subtypes among MSW. The discriminatory index D was 0.90 for MLVA, 0.85 for ompA, and 0.95 for MLVA-ompA.

conclusionsThe most prevalent MLVA-ompA genotypes were significantly different between MSM and MSW from Guangzhou, China. Moreover, MLVA-ompA represented a more favorable degree of discrimination than ompA and could be a reliable complement for ompA for the routine subtypes of C. trachomatis.

Indexed as

GenotypeHomosexuality, MaleSexual PartnersAdolescentAdultBacterial Outer Membrane ProteinsChinaChlamydia InfectionsChlamydia trachomatisFemaleGene ExpressionHumansMaleMiddle AgedMultilocus Sequence TypingPhylogenyBacterial Outer Membrane ProteinsOMPA outer membrane proteins

Identifiers

PMID27434536
PMCPMC4951006

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.