Evidence map›Paper›PMID 27432884›Full record

ArticleThe Journal of biological chemistry2016

Mapping the Effect of Gly Mutations in Collagen on α2β1 Integrin Binding.

Sezin Yigit, Hongtao Yu, Bo An, Samir Hamaia, Richard W Farndale, David L Kaplan, Yu-Shan Lin, Barbara Brodsky

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. A Novel RecurrentArteriosclerosis, thrombosis, and vascular biology · 2020
    Article
  6. Article
  7. Article
  8. Evidence for a de novo, dominant germ-line mutation causative of osteogenesis imperfecta in two Red Angus calves.Mammalian genome : official journal of the International Mammalian Genome Society · 2019
    Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sezin YigitFrom the Departments of Biomedical Engineering and Chemistry, Tufts University, Medford, Massachusetts 02155 and.
Hongtao YuFrom the Departments of Biomedical Engineering and Chemistry, Tufts University, Medford, Massachusetts 02155 and.
Bo AnFrom the Departments of Biomedical Engineering and.
Samir HamaiaDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom.
Richard W FarndaleDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom.
David L KaplanFrom the Departments of Biomedical Engineering and.
Yu-Shan LinChemistry, Tufts University, Medford, Massachusetts 02155 and Yu-Shan.Lin@tufts.edu.
Barbara BrodskyFrom the Departments of Biomedical Engineering and Barbara.Brodsky@tufts.edu.
Tufts University · USUniversity of Cambridge · GB

Funding

Stuctural studies of triple-helical proteinsR01GM060048 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BRODSKY, BARBARA M · 1999 to 2016
$5.1M
Biomaterial Applications of Recombinant Bacterial CollagensR01EB011620 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI BRODSKY, BARBARA M, KAPLAN, DAVID L. · 2010 to 2013
$1.3M
British Heart Foundation PG/10/011/28199British Heart Foundation RG/09/003/27122British Heart Foundation RG/15/4/31268British Heart Foundation SP/13/7/30575Medical Research Council G0500707NIBIB NIH HHS R01 EB011620NIGMS NIH HHS R01 GM060048
6 · The paper itself

Abstract

The replacement of one Gly in the essential repeating tripeptide sequence of the type I collagen triple helix results in the dominant hereditary bone disorder osteogenesis imperfecta. The mechanism leading to pathology likely involves misfolding and autophagy, although it has been hypothesized that some mutations interfere with known collagen interactions. Here, the effect of Gly replacements within and nearby the integrin binding GFPGER sequence was investigated using a recombinant bacterial collagen system. When a six-triplet human type I collagen sequence containing GFPGER was introduced into a bacterial collagen-like protein, this chimeric protein bound to integrin. Constructs with Gly to Ser substitutions within and nearby the inserted human sequence still formed a trypsin-resistant triple helix, suggesting a small local conformational perturbation. Gly to Ser mutations within the two Gly residues in the essential GFPGER sequence prevented integrin binding and cell attachment as predicted from molecular dynamics studies of the complex. Replacement of Gly residues C-terminal to GFPGER did not affect integrin binding. In contrast, Gly replacements N-terminal to the GFPGER sequence, up to four triplets away, decreased integrin binding and cell adhesion. This pattern suggests either an involvement of the triplets N-terminal to GFPGER in initial binding or a propagation of the perturbation of the triple helix C-terminal to a mutation site. The asymmetry in biological consequences relative to the mutation site may relate to the observed pattern of osteogenesis imperfecta mutations near the integrin binding site.

Indexed as

Amino Acid SubstitutionCollagen Type IHumansIntegrin alpha2beta1Mutation, MissenseProtein BindingProtein Structure, SecondaryCollagen Type IIntegrin alpha2beta1bindingcollagenextracellular matrixintegrinmissense mutationsmolecular dynamicsosteogenesis imperfectarecombinant protein expressiontriple helix

Identifiers

PMID27432884
PMCPMC5009287
OpenAlexW2481740791

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.