Evidence map›Paper›PMID 27432880›Full record

ArticleThe Journal of biological chemistry2016

ASC Pyrin Domain Self-associates and Binds NLRP3 Protein Using Equivalent Binding Interfaces.

Javier Oroz, Susana Barrera-Vilarmau, Carlos Alfonso, Germán Rivas, Eva de Alba

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 82 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Javier OrozFrom the Centro de Investigaciones Biológicas, Departments of Chemical and Physical Biology and the German Center for Neurodegenerative Diseases (DZNE), ℅Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, Göttingen-37077, Germany, and jaor@nmr.mpibpc.mpg.de.
Susana Barrera-VilarmauFrom the Centro de Investigaciones Biológicas, Departments of Chemical and Physical Biology and.
Carlos AlfonsoCellular and Molecular Biology, and.
Germán RivasCellular and Molecular Biology, and.
Eva de AlbaCentro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu, 9 Madrid-28040, Spain, the Health Sciences Research Institute, University of California at Merced, Merced, California 95343 edealbabastarrechea@ucmerced.edu edealba@cnb.csic.es.
Centro de Investigaciones Biológicas Margarita Salas · ESConsejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Death domain superfamily members typically act as adaptors mediating in the assembly of supramolecular complexes with critical apoptosis and inflammation functions. These modular proteins consist of death domains, death effector domains, caspase recruitment domains, and pyrin domains (PYD). Despite the high structural similarity among them, only homotypic interactions participate in complex formation, suggesting that subtle factors differentiate each interaction type. It is thus critical to identify these factors as an essential step toward the understanding of the molecular basis of apoptosis and inflammation. The proteins apoptosis-associated speck-like protein containing a CARD (ASC) and NLRP3 play key roles in the regulation of apoptosis and inflammation through self-association and protein-protein interactions mediated by their PYDs. To better understand the molecular basis of their function, we have characterized ASC and NLRP3 PYD self-association and their intermolecular interaction by solution NMR spectroscopy and analytical ultracentrifugation. We found that ASC self-associates and binds NLRP3 PYD through equivalent protein regions, with higher binding affinity for the latter. These regions are located at opposite sides of the protein allowing multimeric complex formation previously shown in ASC PYD fibril assemblies. We show that NLRP3 PYD coexists in solution as a monomer and highly populated large-order oligomerized species. Despite this, we determined its monomeric three-dimensional solution structure by NMR and characterized its binding to ASC PYD. Using our novel structural data, we propose molecular models of ASC·ASC and ASC·NLRP3 PYD early supramolecular complexes, providing new insights into the molecular mechanisms of inflammasome and apoptosis signaling.

Indexed as

Models, MolecularCARD Signaling Adaptor ProteinsCytoskeletal ProteinsHumansNLR Family, Pyrin Domain-Containing 3 ProteinNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, QuaternaryPyrin DomainUltracentrifugationCARD Signaling Adaptor ProteinsCytoskeletal ProteinsNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanPYCARD protein, humanapoptosisASCinflammasomeinflammationNLRP3nuclear magnetic resonance (NMR)pyrin

Identifiers

PMID27432880
PMCPMC5016686
OpenAlexW2490145550

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.