Evidence map›Paper›PMID 27432784›Full record

ArticleIranian biomedical journal2017

Screening of Alginate Lyase-Producing Bacteria and Optimization of Media Compositions for Extracellular Alginate Lyase Production.

Hadis Tavafi, Ahya Abdi-Ali, Parinaz Ghadam, Sara Gharavi

Open access · greenAbstract read
In one paragraph

Article in Iranian biomedical journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Biochemical and computational study of an alginate lyase produced byIranian journal of basic medical sciences · 2020
    Article
  6. Biosynthesised AgCl NPs usingIET nanobiotechnology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hadis TavafiDepartment of Microbiology, Faculty of Biological Sciences, Alzahra University, Tehran, Iran.
Ahya Abdi-AliDepartment of Microbiology, Faculty of Biological Sciences, Alzahra University, Tehran, Iran.
Parinaz GhadamDepartment of Biotechnology, Faculty of Biological Sciences, Alzahra University, Tehran, Iran.
Sara GharaviDepartment of Biotechnology, Faculty of Biological Sciences, Alzahra University, Tehran, Iran.
Alzahra University · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlginate is a linear polysaccharide consisting of guluronate (polyG) and mannuronate (polyM) subunits.

methodsIn the initial screening of alginate-degrading bacteria from soil, 10 isolates were able to grow on minimal medium containing alginate. The optimization of cell growth and alginate lyase (algL) production was carried out by the addition of 0.8% alginate and 0.2-0.3 M NaCl to the culture medium. Of 10 isolates, one was selected based on its fast growth rate on minimal 9 medium containing 0.4% sodium alginate. The selected bacterium, identified based on morphological and biochemical characteristics as well as 16S rDNA sequence data, was confirmed to be an isolate belonging to the genus Bacillus and designated as Bacillus sp. TAG8. Resuls: The results showed the ability of Bacillus sp. TAG8 to utilize alginate as a sole carbon source. Bacillus sp. TAG8 growth and algL production were augmented with an increase in sodium alginate concentration and also by the addition of 0.2-0.3 M NaCl. Molecular analysis of TAG8 algL gene showed 99% sequence identity with algL of Pseudomonas aeruginosa PAO1. algL produced by Bacillus sp. TAG8 cleaved both polyM and polyG blocks in alginate molecule as well as acetylated alginate residues, confirming the bifunctionality of the isolated lyase.

conclusionThe identification of novel algL genes from microbial communities constitutes a new approach for exploring lyases with specific activity against bacterial alginates and may thus contribute to the eradication of persistent biofilms from clinical samples.

Indexed as

BacillusAlginatesBiofilmsDNA, RibosomalGlucuronic AcidHexuronic AcidsPolysaccharide-LyasesPseudomonas aeruginosaRNA, Ribosomal, 16SAlginatesDNA, RibosomalGlucuronic AcidHexuronic Acidspoly(beta-D-mannuronate) lyasePolysaccharide-LyasesRNA, Ribosomal, 16SAlginateAlginate lyaseBacillus spp.Pseudomonas biofilm

Identifiers

PMID27432784
PMCPMC5141254
OpenAlexW2479236798

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.