Evidence map›Paper›PMID 27431992›Full record

ArticleMolecular genetics and genomics : MGG2016

Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA.

Ilya G Kichigin, Massimo Giovannotti, Alex I Makunin, Bee L Ng, Marsel R Kabilov, Alexey E Tupikin, Vincenzo Caputo Barucchi, Andrea Splendiani, Paolo Ruggeri, Willem Rens and 4 more

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

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  10. Whole-chromosome fusions in the karyotype evolution ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
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  16. Identification of sex chromosomes inComparative cytogenetics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Ilya G KichiginInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia. kig@mcb.nsc.ru.
Massimo GiovannottiDipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, via Brecce Bianche, 60131, Ancona, Italy.
Alex I MakuninInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Bee L NgCytometry Core Facility, The Wellcome Trust Sanger Institute, Genome Campus, Cambridge, UK.
Marsel R KabilovInstitute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, 630090, Russia.
Alexey E TupikinInstitute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, 630090, Russia.
Vincenzo Caputo BarucchiDipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, via Brecce Bianche, 60131, Ancona, Italy.
Andrea SplendianiDipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, via Brecce Bianche, 60131, Ancona, Italy.
Paolo RuggeriDipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, via Brecce Bianche, 60131, Ancona, Italy.
Willem RensCambridge Resource Centre for Comparative Genomics, Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.
Patricia C M O'BrienCambridge Resource Centre for Comparative Genomics, Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.
Malcolm A Ferguson-SmithCambridge Resource Centre for Comparative Genomics, Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.
Alexander S GraphodatskyInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Vladimir A TrifonovInstitute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Institute of Molecular and Cell Biology · RUMarche Polytechnic University · ITUniversity of Cambridge · GBInstitute of Chemical Biology and Fundamental Medicine · RUInstitute of Marine Science · ITNovosibirsk State University · RUSiberian Branch of the Russian Academy of Sciences · RUWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Squamate reptiles show a striking diversity in modes of sex determination, including both genetic (XY or ZW) and temperature-dependent sex determination systems. The genomes of only a handful of species have been sequenced, analyzed and assembled including the genome of Anolis carolinensis. Despite a high genome coverage, only macrochromosomes of A. carolinensis were assembled whereas the content of most microchromosomes remained unclear. Most of the Anolis species have homomorphic XY sex chromosome system. However, some species have large heteromorphic XY chromosomes (e.g., A. sagrei) and even multiple sex chromosomes systems (e.g. A. pogus), that were shown to be derived from fusions of the ancestral XY with microautosomes. We applied next generation sequencing of flow sorting-derived chromosome-specific DNA pools to characterize the content and composition of microchromosomes in A. carolinensis and A. sagrei. Comparative analysis of sequenced chromosome-specific DNA pools revealed that the A. sagrei XY sex chromosomes contain regions homologous to several microautosomes of A. carolinensis. We suggest that the sex chromosomes of A. sagrei are derived by fusions of the ancestral sex chromosome with three microautosomes and subsequent loss of some genetic content on the Y chromosome.

Indexed as

AnimalsChromosome MappingDNAEvolution, MolecularHigh-Throughput Nucleotide SequencingMicrodissectionReptilesSequence Analysis, DNASex ChromosomesDNAReptiliaSex determining (SD) genesSquamataXY sex chromosomes

Identifiers

PMID27431992
OpenAlexW2497559383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.