Evidence map›Paper›PMID 27430718›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2016

HIF-1α Is an Essential Mediator of IFN-γ-Dependent Immunity to Mycobacterium tuberculosis.

Jonathan Braverman, Kimberly M Sogi, Daniel Benjamin, Daniel K Nomura, Sarah A Stanley

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed, 1 pooled it
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 1 synthesis or guideline pooled it, 227 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Methylglyoxal AttenuatesInternational journal of molecular sciences · 2026
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  9. Cas9eLife · 2026
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  16. Macrophage states and polarization duringFrontiers in cellular and infection microbiology · 2026
    Review
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  18. Cell envelope maintenance by PhoP is essential forProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Article
  20. Article

87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathan BravermanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720;ORCID 0000-0002-0759-7220
Kimberly M SogiDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720; Division of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, Berkeley, CA 94720; and.ORCID 0000-0002-4011-2440
Daniel BenjaminProgram in Metabolic Biology, Department of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, CA 94720.
Daniel K NomuraProgram in Metabolic Biology, Department of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, CA 94720.ORCID 0000-0003-1614-8360
Sarah A StanleyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720; Division of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, Berkeley, CA 94720; and sastanley@berkeley.edu.ORCID 0000-0002-4182-9048
University of California, Berkeley · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
Metabolic regulation of macrophage function during M. tuberculosis infectionR01AI113270 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI STANLEY, SARAH A · 2015 to 2024
$3.8M
Annotating the Role of Dysregulated Inositol Phosphate Metabolism in Malignant CaR01CA172667 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOMURA, DANIEL · 2013 to 2017
$1.7M
NCI NIH HHS R01 CA172667NIAID NIH HHS R01 AI113270NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

The cytokine IFN-γ coordinates macrophage activation and is essential for control of pathogens, including Mycobacterium tuberculosis However, the mechanisms by which IFN-γ controls M. tuberculosis infection are only partially understood. In this study, we show that the transcription factor hypoxia-inducible factor-1α (HIF-1α) is an essential mediator of IFN-γ-dependent control of M. tuberculosis infection both in vitro and in vivo. M. tuberculosis infection of IFN-γ-activated macrophages results in a synergistic increase in HIF-1α protein levels. This increase in HIF-1α levels is functionally important, as macrophages lacking HIF-1α are defective for IFN-γ-dependent control of infection. RNA-sequencing demonstrates that HIF-1α regulates nearly one-half of all IFN-γ-inducible genes during infection of macrophages. In particular, HIF-1α regulates production of important immune effectors, including inflammatory cytokines and chemokines, eicosanoids, and NO. In addition, we find that during infection HIF-1α coordinates a metabolic shift to aerobic glycolysis in IFN-γ-activated macrophages. We find that this enhanced glycolytic flux is crucial for IFN-γ-dependent control of infection in macrophages. Furthermore, we identify a positive feedback loop between HIF-1α and aerobic glycolysis that amplifies macrophage activation. Finally, we demonstrate that HIF-1α is crucial for control of infection in vivo as mice lacking HIF-1α in the myeloid lineage are strikingly susceptible to infection and exhibit defective production of inflammatory cytokines and microbicidal effectors. In conclusion, we have identified HIF-1α as a novel regulator of IFN-γ-dependent immunity that coordinates an immunometabolic program essential for control of M. tuberculosis infection in vitro and in vivo.

Indexed as

AnimalsBlotting, WesternChromatography, LiquidDisease Models, AnimalEnzyme-Linked Immunosorbent AssayFeedback, PhysiologicalGlycolysisHypoxia-Inducible Factor 1, alpha SubunitInterferon-gammaMacrophage ActivationMacrophagesMiceMice, Inbred C57BLMice, KnockoutMycobacterium tuberculosisPolymerase Chain ReactionHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitInterferon-gamma

Identifiers

PMID27430718
PMCPMC4976004
OpenAlexW2478985445

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.