Evidence map›Paper›PMID 27430223›Full record

ArticleJournal of biomolecular NMR2016

Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein.

Szymon Żerko, Piotr Byrski, Paweł Włodarczyk-Pruszyński, Michał Górka, Karin Ledolter, Eliezer Masliah, Robert Konrat, Wiktor Koźmiński

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Szymon ŻerkoFaculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, 02093, Warsaw, Poland.
Piotr ByrskiFaculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, 02093, Warsaw, Poland.
Paweł Włodarczyk-PruszyńskiFaculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, 02093, Warsaw, Poland.
Michał GórkaFaculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, 02093, Warsaw, Poland.
Karin LedolterDepartment of Computational and Structural Biology, Max F. Perutz Laboratories, University of Vienna, Vienna, Austria.
Eliezer MasliahDepartments of Neuroscience and Pathology, University of California, San Diego, La Jolla, CA, 92093, USA.
Robert KonratDepartment of Computational and Structural Biology, Max F. Perutz Laboratories, University of Vienna, Vienna, Austria.
Wiktor KoźmińskiFaculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, 02093, Warsaw, Poland. kozmin@chem.uw.edu.pl.

Funding

VIRUS-INDUCED BRAIN PATHOLOGYP50AG005131 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BREWER, JAMES B · 1985 to 2018
$55.4M
NIA NIH HHS P50 AG005131
6 · The paper itself

Abstract

New experiments dedicated for large IDPs backbone resonance assignment are presented. The most distinctive feature of all described techniques is the employment of MOCCA-XY16 mixing sequences to obtain effective magnetization transfers between carbonyl carbon backbone nuclei. The proposed 4 and 5 dimensional experiments provide a high dispersion of obtained signals making them suitable for use in the case of large IDPs (application to 354 a. a. residues of Tau protein 3x isoform is presented) as well as provide both forward and backward connectivities. What is more, connecting short chains interrupted with proline residues is also possible. All the experiments employ non-uniform sampling.

Indexed as

Magnetic Resonance Spectroscopyalpha-SynucleinAmino Acid SequenceIntrinsically Disordered ProteinsNuclear Magnetic Resonance, BiomolecularProtein Isoformstau Proteinsalpha-SynucleinIntrinsically Disordered ProteinsProtein Isoformstau ProteinsHigh-dimensionality NMRIntrinsically disordered proteinsIsotropic mixingMOCCA-XY16Non-uniform samplingResonance assignment

Identifiers

PMID27430223
PMCPMC4983291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.