Evidence map›Paper›PMID 27429742›Full record

ArticleF1000Research2016

Combining combing and secondary ion mass spectrometry to study DNA on chips using (13)C and (15)N labeling.

Armelle Cabin-Flaman, Anne-Francoise Monnier, Yannick Coffinier, Jean-Nicolas Audinot, David Gibouin, Tom Wirtz, Rabah Boukherroub, Henri-Noël Migeon, Aaron Bensimon, Laurent Jannière and 2 more

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Hunting the Cell CycleLife (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Armelle Cabin-FlamanEquipe AMMIS, laboratoire MERCI EA 3829, faculté des Sciences et Techniques, University of Rouen, Mont-Saint-Aignan Cedex, France.
Anne-Francoise MonnierEquipe AMMIS, laboratoire MERCI EA 3829, faculté des Sciences et Techniques, University of Rouen, Mont-Saint-Aignan Cedex, France.
Yannick CoffinierInstitute of Electronics, Microelectronics and Nanotechnology (IEMN), UMR CNRS 8520, Lille1 University, Villeneuve d'Ascq, France.
Jean-Nicolas AudinotMaterial Research & Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST), Belvaux, Luxembourg.
David GibouinEquipe AMMIS, laboratoire MERCI EA 3829, faculté des Sciences et Techniques, University of Rouen, Mont-Saint-Aignan Cedex, France.
Tom WirtzMaterial Research & Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST), Belvaux, Luxembourg.
Rabah BoukherroubInstitute of Electronics, Microelectronics and Nanotechnology (IEMN), UMR CNRS 8520, Lille1 University, Villeneuve d'Ascq, France.
Henri-Noël MigeonMaterial Research & Technology Department (MRT), Luxembourg Institute of Science and Technology (LIST), Belvaux, Luxembourg.
Aaron BensimonGenomic Vision, Bagneux, France.
Laurent JannièreiSSB, Génopole, CNRS, UEVE, Université Paris-Saclay, Evry, France.
Camille RipollEquipe AMMIS, laboratoire MERCI EA 3829, faculté des Sciences et Techniques, University of Rouen, Mont-Saint-Aignan Cedex, France.
Victor NorrisLaboratory Microbiology Signals and Environment EA4312, Department of Biology, University of Rouen, Mont-Saint-Aignan Cedex, France.
Université de Rouen Normandie · FRCentre National de la Recherche Scientifique · FRLuxembourg Institute of Science and Technology · LUGenomic Vision (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dynamic secondary ion mass spectrometry ( D-SIMS) imaging of combed DNA - the combing, imaging by SIMS or CIS method - has been developed previously using a standard NanoSIMS 50 to reveal, on the 50 nm scale, individual DNA fibers labeled with different, non-radioactive isotopes in vivo and to quantify these isotopes. This makes CIS especially suitable for determining the times, places and rates of DNA synthesis as well as the detection of the fine-scale re-arrangements of DNA and of molecules associated with combed DNA fibers. Here, we show how CIS may be extended to (13)C-labeling via the detection and quantification of the (13)C (14)N (-) recombinant ion and the use of the (13)C: (12)C ratio, we discuss how CIS might permit three successive labels, and we suggest ideas that might be explored using CIS.

Indexed as

DNA extractionDNA isotope labelingisotope recombinationPCRsilicon chipsurface coating

Identifiers

PMID27429742
PMCPMC4943295
OpenAlexW2468048208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.