Evidence map›Paper›PMID 27429707›Full record

ArticleJournal of biomedical science and engineering2010

Phosphatidylinositol transfer proteins: sequence motifs in structural and evolutionary analyses.

Gerald J Wyckoff, Ada Solidar, Marilyn D Yoden

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science and engineering, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. An origin for a eukaryotic lipid transfer protein fold in Asgard archaea.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gerald J WyckoffDivision of Molecular Biology and Biochemistry, University of Missouri-Kansas City, Kansas City, USA.
Ada SolidarVassa Informatics, Kansas City, USA.
Marilyn D YodenDivision of Cell Biology and Biophysics, University of Missouri-Kansas City, Kansas City, USA. wyckoffg@umkc.edu.
University of Missouri–Kansas City · US

Funding

Role of ZIC and GLI Protein-protein Interactions in Human Brain DisordersR15HD055668 · NICHD · UNIVERSITY OF MISSOURI KANSAS CITY · PI WYCKOFF, GERALD J · 2008 to 2008
$221k
NICHD NIH HHS R15 HD055668
6 · The paper itself

Abstract

Phosphatidylinositol transfer proteins (PITP) are a family of monomeric proteins that bind and transfer phosphatidylinositol and phosphatidylcholine between membrane compartments. They are required for production of inositol and diacylglycerol second messengers, and are found in most metazoan organisms. While PITPs are known to carry out crucial cell-signaling roles in many organisms, the structure, function and evolution of the majority of family members remains unexplored; primarily because the ubiquity and diversity of the family thwarts traditional methods of global alignment. To surmount this obstacle, we instead took a novel approach, using MEME and a parsimony-based analysis to create a cladogram of conserved sequence motifs in 56 PITP family proteins from 26 species. In keeping with previous functional annotations, three clades were supported within our evolutionary analysis; two classes of soluble proteins and a class of membrane-associated proteins. By, focusing on conserved regions, the analysis allowed for in depth queries regarding possible functional roles of PITP proteins in both intra- and extra- cellular signaling.

Indexed as

PhylogeneticsProtein EvolutionSequence MotifStructural Domain

Identifiers

PMID27429707
PMCPMC4943071
OpenAlexW2127780565

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.