Evidence map›Paper›PMID 27428954›Full record

ArticleInternational journal of molecular sciences2016

Human Aquaporin 4 Gating Dynamics under Perpendicularly-Oriented Electric-Field Impulses: A Molecular Dynamics Study.

Paolo Marracino, Micaela Liberti, Erika Trapani, Christian J Burnham, Massimiliano Avena, José-Antonio Garate, Francesca Apollonio, Niall J English

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Aquaporin Modulation by Cations, a Review.Current issues in molecular biology · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Stimulation Strategies for Tinnitus Suppression in a Neuron Model.Computational and mathematical methods in medicine · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Paolo MarracinoDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy. marracino@diet.uniroma1.it.
Micaela LibertiDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy. liberti@diet.uniroma1.it.
Erika TrapaniDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy. erikatrapani@gmail.com.
Christian J BurnhamSchool of Chemical and Bioprocess Engineering, University College Dublin, Belfield, D4 Dublin, Ireland. christian.burnham@ucd.ie.
Massimiliano AvenaDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy. massimilianoavena@icloud.com.
José-Antonio GarateComputational Biology Laboratory, Life Sciences Foundation, 7750000 Santiago, Chile. garate.j.a@gmail.com.
Francesca ApollonioDepartment of Information Engineering, Electronics and Telecommunications, La Sapienza University, 00184 Rome, Italy. apollonio@diet.uniroma1.it.
Niall J EnglishSchool of Chemical and Bioprocess Engineering, University College Dublin, Belfield, D4 Dublin, Ireland. niall.english@ucd.ie.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human aquaporin 4 has been studied using molecular dynamics (MD) simulations in the absence and presence of pulses of external static electric fields. The pulses were 10 ns in duration and 0.012-0.065 V/Å in intensity acting along both directions perpendicular to the pores. Water permeability and the dipolar response of all residues of interest (including the selectivity filter) within the pores have been studied. Results showed decreased levels of water osmotic permeability within aquaporin channels during orthogonally-oriented field impulses, although care must be taken with regard to statistical certainty. This can be explained observing enhanced "dipolar flipping" of certain key residues, especially serine 211, histidine 201, arginine 216, histidine 95 and cysteine 178. These residues are placed at the extracellular end of the pore (serine 211, histidine 201, and arginine 216) and at the cytoplasm end (histidine 95 and cysteine 178), with the key role in gating mechanism, hence influencing water permeability.

Indexed as

Molecular Dynamics SimulationAquaporin 4ElectricityHumansModels, MolecularProtein ConformationWaterAquaporin 4Wateraquaporinelectric fieldmolecular dynamicspermeabilitywater

Identifiers

PMID27428954
PMCPMC4964506

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.