Evidence map›Paper›PMID 27428524›Full record

ArticleNature plants2016

Genetic architecture and pleiotropy shape costs of Rps2-mediated resistance in Arabidopsis thaliana.

Alice MacQueen, Xiaoqin Sun, Joy Bergelson

Abstract read
In one paragraph

Article in Nature plants, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Profile of Joy M. Bergelson.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Frontiers in plant science · 2019
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alice MacQueenDepartment of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, Illinois 60637, USA.ORCID 0000-0002-4606-1832
Xiaoqin SunDepartment of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, Illinois 60637, USA.
Joy BergelsonDepartment of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, Illinois 60637, USA.
University of Chicago · US

Funding

EVOLUTIONARY DYNAMICS OF GENE-FOR-GENE SYSTEMSR01GM062504 · NIGMS · UNIVERSITY OF CHICAGO · PI BERGELSON, JOY M · 2001 to 2004
$1.7M
EVOLUTIONARY GENETICS OF R LOCI IN ARABIDOPSISR01GM057994 · NIGMS · UNIVERSITY OF CHICAGO · PI BERGELSON, JOY M · 1998 to 2007
$1.6M
NIGMS NIH HHS R01 GM057994NIGMS NIH HHS R01 GM062504
6 · The paper itself

Abstract

The mounting evidence that R genes incur large fitness costs raises a question: how can there be a 5-10% fitness reduction for all 149 R genes in the Arabidopsis thaliana genome? The R genes tested to date segregate for insertion-deletion (indel) polymorphisms where susceptible alleles are complete deletions. Since costs of resistance are measured as the differential fitness of isolines carrying resistant and susceptible alleles, indels reveal costs that may be masked when susceptible alleles are expressed. Rps2 segregates for two expressed clades of alleles, one resistant and one susceptible. Plants with resistant Rps2 are not less fit than those with a susceptible Rps2 allele in the absence of disease. Instead, all alleles provide a fitness benefit relative to an artificial deletion because of the role of RPS2 as a negative regulator of defence. Our results highlight the interplay between genomic architecture and the magnitude of costs of resistance.

Indexed as

Polymorphism, GeneticArabidopsisArabidopsis ProteinsGenetic FitnessGenetic PleiotropyPlant DiseasesPlant ImmunityArabidopsis ProteinsRPS2 protein, Arabidopsis

Identifiers

PMID27428524
PMCPMC4968571
OpenAlexW2505640234

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.