Evidence map›Paper›PMID 27428511›Full record

ArticleNature chemical biology2016

Targeted inhibition of oncogenic miR-21 maturation with designed RNA-binding proteins.

Yu Chen, Fan Yang, Lorena Zubovic, Tom Pavelitz, Wen Yang, Katherine Godin, Matthew Walker, Suxin Zheng, Paolo Macchi, Gabriele Varani

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  10. Applications of DNA-Functionalized Proteins.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Yu ChenDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Fan YangDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Lorena ZubovicCentre for Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Tom PavelitzDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Wen YangDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Katherine GodinDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Matthew WalkerDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Suxin ZhengDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
Paolo MacchiCentre for Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Gabriele VaraniDepartment of Chemistry, University of Washington, Seattle, Washington, USA.
University of Washington · USUniversity of Trento · IT

Funding

Regulation of microRNA processingR01GM103834 · NIGMS · UNIVERSITY OF WASHINGTON · PI VARANI, GABRIELE · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM103834
6 · The paper itself

Abstract

The RNA recognition motif (RRM) is the largest family of eukaryotic RNA-binding proteins. Engineered RRMs with well-defined specificity would provide valuable tools and an exacting test of the current understanding of specificity. We have redesigned the specificity of an RRM using rational methods and demonstrated retargeting of its activity in cells. We engineered the conserved RRM of human Rbfox proteins to specifically bind to the terminal loop of a microRNA precursor (pre-miR-21) with high affinity and inhibit its processing by Drosha and Dicer. We further engineered Giardia Dicer by replacing its PAZ domain with the designed RRM. The reprogrammed enzyme degrades pre-miR-21 specifically in vitro and suppresses mature miR-21 levels in cells, which results in increased expression of the tumor suppressor PDCD4 and significantly decreased viability for cancer cells. The results demonstrate the feasibility of rationally engineering the sequence-specificity of RRMs and of using this ubiquitous platform for diverse biological applications.

Indexed as

HumansMicroRNAsModels, MolecularProtein EngineeringRNA-Binding ProteinsRNA Recognition MotifMicroRNAsMIRN21 microRNA, humanRNA-Binding Proteins

Identifiers

PMID27428511
PMCPMC4990487
OpenAlexW2489289000

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.